D. rerio Gene: arl13a - ENSDARG00000052575 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000052575
Namearl13a
DescriptionADP-ribosylation factor-like 13A [Source:ZFIN;Acc:ZDB-GENE-040426-1790]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:73398
Orthologs(s)1 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0000066fully formed stage
1.35e3
  • 1.35e3
  • 1.15e4
  • 1.20e4
  • 1.28e4
  • 1.30e4
  • 1.36e4
95.48
  • 95.48
  • 61.34
  • 59.98
  • 57.12
  • 56.49
  • 54.48
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
2.31e3
  • 2.31e3
  • 5.01e3
92.27
  • 92.27
  • 83.23
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
2.56e3
  • 2.56e3
  • 1.69e4
91.42
  • 91.42
  • 43.38
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
4.12e3
  • 4.12e3
86.22
  • 86.22
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
4.27e3
  • 4.27e3
85.69
  • 85.69
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
4.43e3
  • 4.43e3
  • 8.65e3
85.18
  • 85.18
  • 71.04
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
5.49e3
  • 5.49e3
81.61
  • 81.61
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
7.36e3
  • 7.36e3
75.36
  • 75.36
AEIR
  • AEIR
UBERON:0001787photoreceptor layer of retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
7.47e3
  • 7.47e3
  • 8.96e3
  • 9.33e3
  • 1.49e4
  • 1.49e4
75.00
  • 75.00
  • 69.99
  • 68.74
  • 49.99
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
8.42e3
  • 8.42e3
71.81
  • 71.81
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
8.96e3
  • 8.96e3
  • 1.37e4
  • 1.86e4
  • 2.13e4
  • 2.15e4
70.01
  • 70.01
  • 54.29
  • 37.75
  • 28.66
  • 28.17
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.01e4
  • 1.01e4
66.29
  • 66.29
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
1.10e4
  • 1.10e4
63.08
  • 63.08
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000029Pharyngula:Prim-5
1.14e4
  • 1.14e4
  • 1.20e4
  • 1.49e4
61.88
  • 61.88
  • 59.98
  • 49.97
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.18e4
  • 1.18e4
  • 2.07e4
60.46
  • 60.46
  • 30.69
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.49e4
  • 1.49e4
50.07
  • 50.07
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.69e4
  • 1.69e4
43.32
  • 43.32
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.76e4
  • 1.76e4
41.18
  • 41.18
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.84e4
  • 1.84e4
38.25
  • 38.25
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
2.01e4
  • 2.01e4
32.74
  • 32.74
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.08e4
  • 2.08e4
30.41
  • 30.41
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.16e4
  • 2.16e4
27.78
  • 27.78
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
2.19e4
  • 2.19e4
26.56
  • 26.56
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi1 species1 geneCompare expression

Orthology information comes from OMA : ENSDARG00000052575.

Cross-references

EnsemblENSDARG00000052575 (arl13a)
ZFINZDB-GENE-040426-1790 (arl13a)
EMBLCR354605
Uniprot/SPTREMBLF1QKW5, F1QKW5_DANRE

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