D. rerio Gene: si:ch211-193e13.5 - ENSDARG00000052656 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000052656
Namesi:ch211-193e13.5
Descriptionsi:ch211-193e13.5 [Source:ZFIN;Acc:ZDB-GENE-081104-158]
OrganismDanio rerio (zebrafish)
Paralog(s)5 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
885
  • 885
97.04
  • 97.04
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.98e3
  • 2.98e3
90.03
  • 90.03
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
3.26e3
  • 3.26e3
89.08
  • 89.08
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
9.47e3
  • 9.47e3
68.28
  • 68.28
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.07e4
  • 1.07e4
64.15
  • 64.15
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.23e4
  • 1.23e4
58.74
  • 58.74
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.26e4
  • 1.26e4
57.67
  • 57.67
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.32e4
  • 1.32e4
55.76
  • 55.76
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.39e4
  • 1.39e4
53.61
  • 53.61
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.45e4
  • 1.45e4
  • 1.86e4
51.43
  • 51.43
  • 37.57
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.58e4
  • 1.58e4
47.15
  • 47.15
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.75e4
  • 1.75e4
41.26
  • 41.26
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
1.76e4
  • 1.76e4
40.94
  • 40.94
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.87e4
  • 1.87e4
37.48
  • 37.48
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
2.14e4
  • 2.14e4
  • 2.27e4
  • 2.28e4
  • 2.45e4
28.31
  • 28.31
  • 24.07
  • 23.74
  • 17.81
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
2.23e4
  • 2.23e4
25.30
  • 25.30
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Otophysi5 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000052656.

Cross-references

EnsemblENSDARG00000052656 (si:ch211-193e13.5)
ZFINZDB-GENE-081104-158 (si:ch211-193e13.5)
EMBLBX682234
Uniprot/SPTREMBLB8A5W1, B8A5W1_DANRE

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