D. rerio Gene: nr2f1a - ENSDARG00000052695 - Danio rerio (zebrafish)

Gene Information

Ensembl IDENSDARG00000052695
Namenr2f1a
Descriptionnuclear receptor subfamily 2, group F, member 1a [Source:ZFIN;Acc:ZDB-GENE-980526-115]
OrganismDanio rerio (zebrafish)

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreSources
UBERON:0000468multi-cellular organism
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000068embryo stage
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000066fully formed stage
1.02e3
  • 1.02e3
  • 1.18e3
  • 1.40e3
  • 1.72e3
  • 1.73e3
  • 2.84e3
  • 4.47e3
  • 5.01e3
  • 7.79e3
  • 1.06e4
  • 1.09e4
  • 1.19e4
  • 1.34e4
  • 1.49e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.17e3
  • 1.17e3
  • 1.01e4
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0004707pharyngula stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
1.23e3
  • 1.23e3
  • 1.24e3
  • 1.73e3
  • 1.79e3
  • 1.88e3
  • 2.37e3
  • 2.49e3
  • 4.50e3
  • 6.10e3
  • 6.57e3
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.63e3
  • 1.63e3
  • 1.73e3
  • 2.34e3
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000104life cycle
2.38e3
  • 2.38e3
  • 2.55e3
  • 1.48e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
2.43e3
  • 2.43e3
  • 3.74e3
  • 4.17e3
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
2.69e3
  • 2.69e3
AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000035Larval:Protruding-mouth
4.93e3
  • 4.93e3
  • 7.40e3
  • 8.37e3
  • 8.57e3
  • 9.42e3
  • 1.03e4
  • 1.15e4
  • 1.22e4
  • 1.35e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
5.78e3
  • 5.78e3
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000029Pharyngula:Prim-5
5.92e3
  • 5.92e3
  • 8.63e3
  • 9.05e3
  • 9.62e3
  • 1.07e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
5.93e3
  • 5.93e3
  • 1.01e4
  • 1.17e4
  • 1.38e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2007032midbrain neural rod
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000025Segmentation:10-13 somites
6.34e3
  • 6.34e3
  • 1.18e4
  • 1.18e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000029Pharyngula:Prim-5
6.34e3
  • 6.34e3
  • 1.09e4
  • 1.16e4
  • 1.18e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001893telencephalon
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000026Segmentation:14-19 somites
6.79e3
  • 6.79e3
  • 7.01e3
  • 7.40e3
  • 1.09e4
  • 1.09e4
  • 1.15e4
  • 1.20e4
  • 1.32e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
6.91e3
  • 6.91e3
  • 9.65e3
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
7.30e3
  • 7.30e3
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
7.33e3
  • 7.33e3
AEIR
  • AEIR
UBERON:0003053ventricular zone
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000032Pharyngula:High-pec
7.40e3
  • 7.40e3
  • 8.63e3
  • 1.02e4
  • 1.11e4
  • 1.11e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
7.40e3
  • 7.40e3
  • 7.75e3
  • 8.14e3
  • 9.01e3
  • 1.04e4
  • 1.04e4
  • 1.25e4
  • 1.26e4
  • 1.33e4
  • 1.37e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000033Hatching:Long-pec
7.93e3
  • 7.93e3
  • 8.14e3
  • 8.14e3
  • 1.32e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001943midbrain tegmentum
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
8.22e3
  • 8.22e3
  • 8.71e3
  • 8.71e3
  • 9.58e3
  • 1.02e4
  • 1.39e4
  • 1.48e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
8.53e3
  • 8.53e3
AEIR
  • AEIR
UBERON:0010285midbrain basal plate
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
8.71e3
  • 8.71e3
  • 8.71e3
  • 8.71e3
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003081lateral plate mesoderm
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
8.88e3
  • 8.88e3
  • 1.11e4
  • 1.32e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001890forebrain
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000037Larval:Day 5
9.11e3
  • 9.11e3
  • 1.02e4
  • 1.09e4
  • 1.16e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2007029hindbrain neural keel
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000023Segmentation:1-4 somites
9.25e3
  • 9.25e3
  • 1.48e4
AEIR
  • AEIR
  • AEIR
UBERON:2001286caudal vein plexus
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
9.86e3
  • 9.86e3
  • 1.48e4
AEIR
  • AEIR
  • AEIR
UBERON:2007025midbrain neural keel
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
9.87e3
  • 9.87e3
  • 1.11e4
  • 1.11e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002539pharyngeal arch
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000035Larval:Protruding-mouth
1.02e4
  • 1.02e4
  • 1.02e4
  • 1.04e4
  • 1.14e4
  • 1.32e4
  • 1.35e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2000083ventral mesoderm
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
1.04e4
  • 1.04e4
  • 1.09e4
  • 1.09e4
  • 1.16e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000925endoderm
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000023Segmentation:1-4 somites
1.06e4
  • 1.06e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
UBERON:0003051ear vesicle
  • ZFS:0000026Segmentation:14-19 somites
1.06e4
  • 1.06e4
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.06e4
  • 1.06e4
AEIR
  • AEIR
UBERON:0002328notochord
  • ZFS:0000026Segmentation:14-19 somites
1.07e4
  • 1.07e4
AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
1.07e4
  • 1.07e4
  • 1.07e4
  • 1.36e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005519rhombomere 6
  • ZFS:0000026Segmentation:14-19 somites
1.11e4
  • 1.11e4
AEIR
  • AEIR
UBERON:0002037cerebellum
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
1.16e4
  • 1.16e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.18e4
  • 1.18e4
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000024Segmentation:5-9 somites
1.18e4
  • 1.18e4
AEIR
  • AEIR
UBERON:0001900ventral thalamus
  • ZFS:0000033Hatching:Long-pec
1.23e4
  • 1.23e4
AEIR
  • AEIR
UBERON:0002201vasculature of trunk
  • ZFS:0000029Pharyngula:Prim-5
1.23e4
  • 1.23e4
AEIR
  • AEIR
UBERON:0005515rhombomere 5
  • ZFS:0000026Segmentation:14-19 somites
1.23e4
  • 1.23e4
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.23e4
  • 1.23e4
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
  • ZFS:0000021Gastrula:90%-epiboly
1.25e4
  • 1.25e4
  • 1.53e4
  • 1.67e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000965lens of camera-type eye
  • ZFS:0000033Hatching:Long-pec
1.28e4
  • 1.28e4
AEIR
  • AEIR
UBERON:0003072optic cup
  • ZFS:0000029Pharyngula:Prim-5
1.33e4
  • 1.33e4
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.37e4
  • 1.37e4
AEIR
  • AEIR
UBERON:0005805dorsal aorta
  • ZFS:0000029Pharyngula:Prim-5
1.37e4
  • 1.37e4
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.46e4
  • 1.46e4
AEIR
  • AEIR
UBERON:0002200vasculature of head
  • ZFS:0000030Pharyngula:Prim-15
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:2000516periventricular grey zone
  • ZFS:0000033Hatching:Long-pec
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:2005295axial blood vessel
  • ZFS:0000026Segmentation:14-19 somites
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:0005499rhombomere 1
  • ZFS:0000026Segmentation:14-19 somites
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:0005569rhombomere 2
  • ZFS:0000026Segmentation:14-19 somites
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:0014907intersomitic vessel
  • ZFS:0000030Pharyngula:Prim-15
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:0005511rhombomere 4
  • ZFS:0000026Segmentation:14-19 somites
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:0005507rhombomere 3
  • ZFS:0000026Segmentation:14-19 somites
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:2007042spinal cord neural tube
  • ZFS:0000026Segmentation:14-19 somites
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.51e4
  • 1.51e4
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.53e4
  • 1.53e4
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.64e4
  • 1.64e4
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.71e4
  • 1.71e4
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation
Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.
Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data: