D. rerio Gene: lrrtm1 - ENSDARG00000052713 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000052713
Namelrrtm1
Descriptionleucine rich repeat transmembrane neuronal 1 [Source:ZFIN;Acc:ZDB-GENE-050506-80]
OrganismDanio rerio (zebrafish)
Synonym(s)im:6904481

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
1.31e3
  • 1.31e3
  • 2.72e3
  • 4.44e3
  • 7.12e3
  • 7.33e3
  • 1.09e4
  • 1.10e4
  • 1.12e4
  • 1.27e4
  • 1.41e4
  • 1.50e4
  • 1.50e4
95.60
  • 95.60
  • 90.89
  • 85.15
  • 76.17
  • 75.45
  • 63.53
  • 63.25
  • 62.41
  • 57.52
  • 52.95
  • 49.92
  • 49.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001893telencephalon
  • ZFS:0000037Larval:Day 5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
1.87e3
  • 1.87e3
  • 6.29e3
  • 6.64e3
  • 7.47e3
  • 9.44e3
  • 9.44e3
  • 1.08e4
  • 1.12e4
93.75
  • 93.75
  • 78.94
  • 77.77
  • 74.98
  • 68.40
  • 68.40
  • 63.87
  • 62.48
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
2.15e3
  • 2.15e3
  • 6.39e3
  • 8.49e3
  • 9.10e3
  • 1.11e4
  • 1.12e4
92.82
  • 92.82
  • 78.62
  • 71.56
  • 69.55
  • 62.68
  • 62.50
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000104life cycle
2.55e3
  • 2.55e3
  • 9.03e3
  • 1.45e4
91.47
  • 91.47
  • 69.75
  • 51.33
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
2.71e3
  • 2.71e3
  • 4.80e3
  • 6.08e3
90.92
  • 90.92
  • 83.92
  • 79.65
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001791inner nuclear layer of retina
  • ZFS:0000037Larval:Day 5
3.32e3
  • 3.32e3
88.89
  • 88.89
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0004707pharyngula stage
3.71e3
  • 3.71e3
  • 7.15e3
  • 9.10e3
  • 1.06e4
  • 1.20e4
  • 1.28e4
  • 1.35e4
  • 1.39e4
  • 1.39e4
  • 1.43e4
87.57
  • 87.57
  • 76.07
  • 69.53
  • 64.44
  • 59.95
  • 57.24
  • 54.90
  • 53.61
  • 53.40
  • 51.95
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2007036hindbrain neural rod
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
4.98e3
  • 4.98e3
  • 7.47e3
  • 1.49e4
83.34
  • 83.34
  • 75.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
5.60e3
  • 5.60e3
  • 1.02e4
  • 1.05e4
81.25
  • 81.25
  • 65.77
  • 64.69
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001943midbrain tegmentum
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
5.97e3
  • 5.97e3
  • 7.47e3
  • 7.91e3
  • 7.91e3
  • 9.34e3
  • 9.67e3
  • 1.12e4
  • 1.12e4
80.00
  • 80.00
  • 74.99
  • 73.52
  • 73.52
  • 68.74
  • 67.63
  • 62.48
  • 62.48
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000037Larval:Day 5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000036Larval:Day 4
5.97e3
  • 5.97e3
  • 6.40e3
  • 6.72e3
  • 8.01e3
  • 8.96e3
  • 9.10e3
  • 1.05e4
  • 1.10e4
  • 1.49e4
80.00
  • 80.00
  • 78.56
  • 77.49
  • 73.19
  • 69.98
  • 69.55
  • 64.98
  • 63.14
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000037Larval:Day 5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
6.40e3
  • 6.40e3
  • 7.80e3
  • 7.86e3
  • 8.09e3
  • 9.10e3
  • 9.51e3
  • 1.14e4
  • 1.16e4
78.57
  • 78.57
  • 73.90
  • 73.67
  • 72.90
  • 69.55
  • 68.16
  • 61.75
  • 61.09
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004128optic vesicle
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
7.03e3
  • 7.03e3
  • 7.03e3
  • 7.03e3
76.46
  • 76.46
  • 76.46
  • 76.46
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2007034forebrain neural rod
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
7.47e3
  • 7.47e3
  • 8.96e3
  • 9.33e3
75.00
  • 75.00
  • 70.00
  • 68.74
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000540neuron
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
7.47e3
  • 7.47e3
  • 7.47e3
  • 8.15e3
  • 9.19e3
  • 9.34e3
  • 9.34e3
74.99
  • 74.99
  • 74.99
  • 72.71
  • 69.22
  • 68.74
  • 68.74
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
7.47e3
  • 7.47e3
  • 7.47e3
  • 8.01e3
  • 8.83e3
  • 9.51e3
  • 1.02e4
  • 1.05e4
74.99
  • 74.99
  • 74.99
  • 73.19
  • 70.44
  • 68.16
  • 65.77
  • 64.69
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0010285midbrain basal plate
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
7.91e3
  • 7.91e3
  • 7.91e3
  • 7.91e3
73.52
  • 73.52
  • 73.52
  • 73.52
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001890forebrain
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000036Larval:Day 4
7.97e3
  • 7.97e3
  • 1.49e4
73.32
  • 73.32
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0010312immature eye
  • ZFS:0000026Segmentation:14-19 somites
8.30e3
  • 8.30e3
72.21
  • 72.21
AEIR
  • AEIR
UBERON:2007032midbrain neural rod
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000025Segmentation:10-13 somites
8.53e3
  • 8.53e3
  • 8.96e3
  • 8.96e3
71.43
  • 71.43
  • 70.00
  • 70.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001892rhombomere
  • ZFS:0000026Segmentation:14-19 somites
8.54e3
  • 8.54e3
71.42
  • 71.42
AEIR
  • AEIR
UBERON:0003071eye primordium
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
9.60e3
  • 9.60e3
  • 1.03e4
  • 1.03e4
67.85
  • 67.85
  • 65.37
  • 65.37
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2007026forebrain neural keel
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
9.60e3
  • 9.60e3
  • 1.03e4
  • 1.03e4
67.85
  • 67.85
  • 65.37
  • 65.37
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2007025midbrain neural keel
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
9.96e3
  • 9.96e3
  • 9.96e3
  • 9.96e3
66.66
  • 66.66
  • 66.66
  • 66.66
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2007029hindbrain neural keel
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
1.07e4
  • 1.07e4
  • 1.07e4
  • 1.12e4
64.28
  • 64.28
  • 64.28
  • 62.49
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
1.38e4
  • 1.38e4
  • 1.41e4
53.79
  • 53.79
  • 52.88
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.47e4
  • 1.47e4
50.90
  • 50.90
AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000036Larval:Day 4
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.51e4
  • 1.51e4
49.37
  • 49.37
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.51e4
  • 1.51e4
49.33
  • 49.33
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
1.53e4
  • 1.53e4
  • 1.75e4
48.65
  • 48.65
  • 41.42
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.58e4
  • 1.58e4
46.93
  • 46.93
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.71e4
  • 1.71e4
42.86
  • 42.86
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.93e4
  • 1.93e4
35.53
  • 35.53
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.03e4
  • 2.03e4
32.18
  • 32.18
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
2.03e4
  • 2.03e4
32.08
  • 32.08
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.03e4
  • 2.03e4
31.96
  • 31.96
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLCU076051
EnsemblENSDARG00000052713 (lrrtm1)
Uniprot/SPTREMBLB8JKM0, B8JKM0_DANRE, E9QIF9, E9QIF9_DANRE
ZFINZDB-GENE-050506-80 (lrrtm1)

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