D. rerio Gene: gpatch3 - ENSDARG00000052747 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000052747
Namegpatch3
DescriptionG patch domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-070112-902]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:158863

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000016Blastula:30%-epiboly
1.60e3
  • 1.60e3
  • 3.83e3
  • 4.22e3
  • 4.59e3
  • 5.51e3
94.65
  • 94.65
  • 87.17
  • 85.87
  • 84.63
  • 81.55
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
2.39e3
  • 2.39e3
  • 1.50e4
91.99
  • 91.99
  • 49.89
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
3.85e3
  • 3.85e3
87.12
  • 87.12
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
3.87e3
  • 3.87e3
87.06
  • 87.06
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
3.99e3
  • 3.99e3
86.64
  • 86.64
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
4.55e3
  • 4.55e3
  • 4.92e3
  • 6.52e3
  • 7.49e3
  • 7.90e3
  • 8.13e3
84.78
  • 84.78
  • 83.54
  • 78.16
  • 74.91
  • 73.56
  • 72.77
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
4.68e3
  • 4.68e3
84.35
  • 84.35
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
4.76e3
  • 4.76e3
84.08
  • 84.08
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0004707pharyngula stage
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
4.92e3
  • 4.92e3
  • 5.51e3
  • 8.33e3
  • 8.47e3
  • 9.41e3
  • 1.00e4
  • 1.01e4
  • 1.03e4
  • 1.06e4
  • 1.26e4
83.53
  • 83.53
  • 81.56
  • 72.12
  • 71.65
  • 68.48
  • 66.43
  • 66.32
  • 65.68
  • 64.52
  • 57.94
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
5.37e3
  • 5.37e3
82.03
  • 82.03
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
5.65e3
  • 5.65e3
  • 5.73e3
  • 6.23e3
  • 7.18e3
81.08
  • 81.08
  • 80.80
  • 79.15
  • 75.96
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
5.86e3
  • 5.86e3
80.37
  • 80.37
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
5.94e3
  • 5.94e3
80.12
  • 80.12
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
6.10e3
  • 6.10e3
79.57
  • 79.57
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000106zygote stage
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000042Juvenile:Days 30-44
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
6.24e3
  • 6.24e3
  • 7.35e3
  • 7.54e3
  • 7.94e3
  • 8.30e3
  • 9.68e3
  • 1.02e4
  • 1.06e4
  • 1.07e4
  • 1.16e4
  • 1.18e4
  • 1.20e4
  • 1.21e4
  • 1.33e4
  • 1.33e4
  • 1.50e4
  • 1.50e4
79.11
  • 79.11
  • 75.39
  • 74.74
  • 73.43
  • 72.22
  • 67.59
  • 65.93
  • 64.41
  • 64.29
  • 61.24
  • 60.56
  • 59.67
  • 59.49
  • 55.61
  • 55.48
  • 49.92
  • 49.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
6.46e3
  • 6.46e3
  • 1.35e4
78.37
  • 78.37
  • 54.68
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
6.74e3
  • 6.74e3
77.42
  • 77.42
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
7.50e3
  • 7.50e3
74.89
  • 74.89
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
7.73e3
  • 7.73e3
  • 1.50e4
74.12
  • 74.12
  • 49.92
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
7.84e3
  • 7.84e3
  • 8.52e3
73.75
  • 73.75
  • 71.48
AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
7.97e3
  • 7.97e3
73.30
  • 73.30
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
8.05e3
  • 8.05e3
  • 8.66e3
73.05
  • 73.05
  • 70.99
AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
8.17e3
  • 8.17e3
72.65
  • 72.65
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
8.34e3
  • 8.34e3
72.08
  • 72.08
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
8.63e3
  • 8.63e3
  • 9.33e3
71.12
  • 71.12
  • 68.76
AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
9.27e3
  • 9.27e3
68.97
  • 68.97
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
9.28e3
  • 9.28e3
68.94
  • 68.94
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
9.53e3
  • 9.53e3
  • 1.15e4
  • 1.23e4
68.10
  • 68.10
  • 61.50
  • 58.81
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
9.67e3
  • 9.67e3
67.63
  • 67.63
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
1.01e4
  • 1.01e4
66.12
  • 66.12
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.03e4
  • 1.03e4
65.61
  • 65.61
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.16e4
  • 1.16e4
61.16
  • 61.16
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Cross-references

EnsemblENSDARG00000052747 (gpatch3)
Uniprot/SPTREMBLF1QG49, F1QG49_DANRE
ZFINZDB-GENE-070112-902 (gpatch3)

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