D. rerio Gene: opn3 - ENSDARG00000052775 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000052775
Nameopn3
Descriptionopsin 3 [Source:ZFIN;Acc:ZDB-GENE-080227-16]
OrganismDanio rerio (zebrafish)
Synonym(s)encephalopsin
Orthologs(s)15 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
3.83e3
  • 3.83e3
87.18
  • 87.18
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
5.10e3
  • 5.10e3
  • 1.38e4
82.92
  • 82.92
  • 53.63
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
6.14e3
  • 6.14e3
  • 1.70e4
79.46
  • 79.46
  • 42.95
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
1.09e4
  • 1.09e4
  • 2.02e4
  • 2.03e4
  • 2.04e4
  • 2.05e4
63.61
  • 63.61
  • 32.49
  • 31.89
  • 31.60
  • 31.38
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.12e4
  • 1.12e4
  • 2.16e4
62.65
  • 62.65
  • 27.78
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
1.15e4
  • 1.15e4
  • 1.36e4
61.62
  • 61.62
  • 54.53
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.61e4
  • 1.61e4
46.18
  • 46.18
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.72e4
  • 1.72e4
42.49
  • 42.49
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.04e4
  • 2.04e4
31.63
  • 31.63
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
2.10e4
  • 2.10e4
29.77
  • 29.77
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
2.12e4
  • 2.12e4
29.16
  • 29.16
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Cross-references

EnsemblENSDARG00000052775 (opn3)
ZFINZDB-GENE-080227-16 (opn3)
EMBLBX005050, EF043381
Uniprot/SPTREMBLA9NJI7, A9NJI7_DANRE

Do not show this banner again