Gene: ctso - ENSDARG00000052855 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000052855
Name	ctso
Description	cathepsin O [Source:ZFIN;Acc:ZDB-GENE-080724-8]
Organism	Danio rerio (zebrafish)
Orthologs(s)	18 orthologs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0002107	liver	[+] 1 stage UBERON:0000066fully formed stage	3.01e3 3.01e3	89.94 89.94	AEIR AEIR
UBERON:0000473	testis	[+] 1 stage UBERON:0000066fully formed stage	5.55e3 5.55e3	81.41 81.41	AEIR AEIR
UBERON:0000160	intestine	[+] 1 stage UBERON:0000066fully formed stage	5.56e3 5.56e3	81.39 81.39	AEIR AEIR
UBERON:0000307	blastula	[+] 2 stages ZFS:0000015Blastula:Dome ZFS:0000011Blastula:1k-cell	6.68e3 6.68e3 7.13e3	77.64 77.64 76.12	AEIR AEIR AEIR
UBERON:0002106	spleen	[+] 1 stage UBERON:0000066fully formed stage	7.10e3 7.10e3	76.23 76.23	AEIR AEIR
CL:0000094	granulocyte	[+] 1 stage UBERON:0000066fully formed stage	7.17e3 7.17e3	76.00 76.00	AEIR AEIR
UBERON:0000206	pharyngeal gill	[+] 1 stage UBERON:0000066fully formed stage	7.22e3 7.22e3	75.82 75.82	AEIR AEIR
UBERON:0004734	gastrula	[+] 2 stages ZFS:0000019Gastrula:Shield ZFS:0000022Gastrula:Bud	7.63e3 7.63e3 8.72e3	74.45 74.45 70.82	AEIR AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	7.69e3 7.69e3	74.26 74.26	AEIR AEIR
UBERON:0006860	swim bladder	[+] 1 stage UBERON:0000066fully formed stage	8.04e3 8.04e3	73.09 73.09	AEIR AEIR
UBERON:0019248	early embryo	[+] 1 stage UBERON:0000107cleavage stage	8.12e3 8.12e3	72.80 72.80	AEIR AEIR
UBERON:0000948	heart	[+] 2 stages UBERON:0000066fully formed stage ZFS:0000036Larval:Day 4	8.43e3 8.43e3 1.05e4	71.79 71.79 64.75	AEIR AEIR AEIR
UBERON:0007132	head kidney	[+] 1 stage UBERON:0000066fully formed stage	8.64e3 8.64e3	71.06 71.06	AEIR AEIR
UBERON:0001630	muscle organ	[+] 1 stage UBERON:0000066fully formed stage	9.39e3 9.39e3	68.56 68.56	AEIR AEIR
UBERON:0002415	tail	[+] 1 stage UBERON:0000066fully formed stage	9.68e3 9.68e3	67.58 67.58	AEIR AEIR
UBERON:0000955	brain	[+] 1 stage UBERON:0000066fully formed stage	1.03e4 1.03e4	65.66 65.66	AEIR AEIR
UBERON:0000992	female gonad	[+] 1 stage UBERON:0000066fully formed stage	1.09e4 1.09e4	63.51 63.51	AEIR AEIR
UBERON:0000922	embryo	[+] 5 stages UBERON:0004707pharyngula stage ZFS:0000029Pharyngula:Prim-5 ZFS:0000037Larval:Day 5 UBERON:0000068embryo stage ZFS:0000033Hatching:Long-pec	1.09e4 1.09e4 1.12e4 1.19e4 1.22e4 1.22e4	63.42 63.42 62.48 60.10 59.20 58.99	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0002548	larva	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000069larval stage	1.13e4 1.13e4 1.18e4	62.06 62.06 60.34	AEIR AEIR AEIR
UBERON:0000970	eye	[+] 1 stage ZFS:0000031Pharyngula:Prim-25	1.23e4 1.23e4	58.83 58.83	AEIR AEIR
UBERON:0002385	muscle tissue	[+] 1 stage UBERON:0000066fully formed stage	1.28e4 1.28e4	57.31 57.31	AEIR AEIR
UBERON:0000033	head	[+] 2 stages UBERON:0000066fully formed stage ZFS:0000037Larval:Day 5	1.30e4 1.30e4 1.44e4	56.33 56.33 51.71	AEIR AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	1.54e4 1.54e4	48.40 48.40	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

RNA-Seq data: Bgee

Sources of raw data:

RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Euteleostomi	18 species Homo sapiens (human) Mus musculus (mouse) Pan troglodytes (chimpanzee) Gorilla gorilla (gorilla) Macaca mulatta (macaque) Bos taurus (cattle) Sus scrofa (pig) Equus caballus (horse) Oryctolagus cuniculus (rabbit) Canis lupus familiaris (dog) Felis catus (cat) Cavia porcellus (guinea pig) Erinaceus europaeus (hedgehog) Monodelphis domestica (opossum) Ornithorhynchus anatinus (platypus) Gallus gallus (chicken) Anolis carolinensis (green anole) Xenopus tropicalis (western clawed frog)	18 genes ENSG00000256043 CTSO ENSMUSG00000028015 Ctso ENSPTRG00000016545 CTSO ENSGGOG00000016215 CTSO ENSMMUG00000022019 CTSO ENSBTAG00000011063 CTSO ENSSSCG00000008867 CTSO ENSECAG00000020037 CTSO ENSOCUG00000015469 CTSO ENSCAFG00000008602 CTSO ENSFCAG00000028750 CTSO ENSCPOG00000011768 CTSO ENSEEUG00000006443 CTSO ENSMODG00000001694 CTSO ENSOANG00000015661 ASIC5 ENSGALG00000009373 CTSO ENSACAG00000016864 CTSO ENSXETG00000022392 ctso	Compare expression	[+]

Orthology information comes from OMA : ENSDARG00000052855.

Cross-references

Ensembl	ENSDARG00000052855 (ctso)
ZFIN	ZDB-GENE-080724-8 (ctso)
EMBL	CR931784
Uniprot/SPTREMBL	E7FA09, E7FA09_DANRE