D. rerio Gene: atxn2 - ENSDARG00000052897 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000052897
Nameatxn2
Descriptionataxin 2 [Source:ZFIN;Acc:ZDB-GENE-060526-217]
OrganismDanio rerio (zebrafish)
Synonym(s)si:dkey-165i4.1

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
5.69e3
  • 5.69e3
  • 7.24e3
80.95
  • 80.95
  • 75.77
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
5.97e3
  • 5.97e3
80.01
  • 80.01
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
6.31e3
  • 6.31e3
  • 8.83e3
78.87
  • 78.87
  • 70.45
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
6.38e3
  • 6.38e3
78.63
  • 78.63
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
6.46e3
  • 6.46e3
78.38
  • 78.38
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
6.49e3
  • 6.49e3
78.29
  • 78.29
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
6.63e3
  • 6.63e3
77.80
  • 77.80
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
6.78e3
  • 6.78e3
  • 1.08e4
  • 1.17e4
  • 1.27e4
  • 1.29e4
77.30
  • 77.30
  • 63.92
  • 60.74
  • 57.64
  • 56.84
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
7.01e3
  • 7.01e3
76.52
  • 76.52
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
7.44e3
  • 7.44e3
75.11
  • 75.11
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
8.25e3
  • 8.25e3
  • 1.29e4
72.37
  • 72.37
  • 56.68
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
8.26e3
  • 8.26e3
72.33
  • 72.33
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
8.39e3
  • 8.39e3
71.92
  • 71.92
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
8.43e3
  • 8.43e3
71.78
  • 71.78
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
8.93e3
  • 8.93e3
70.11
  • 70.11
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
8.96e3
  • 8.96e3
70.01
  • 70.01
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
9.52e3
  • 9.52e3
68.14
  • 68.14
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
9.95e3
  • 9.95e3
66.68
  • 66.68
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
9.99e3
  • 9.99e3
66.56
  • 66.56
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.06e4
  • 1.06e4
64.60
  • 64.60
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.10e4
  • 1.10e4
  • 1.22e4
63.24
  • 63.24
  • 59.03
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.13e4
  • 1.13e4
62.25
  • 62.25
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.13e4
  • 1.13e4
62.00
  • 62.00
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.21e4
  • 1.21e4
59.43
  • 59.43
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.24e4
  • 1.24e4
58.42
  • 58.42
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Cross-references

EMBLCR753867, CR854992
EnsemblENSDARG00000052897 (atxn2)
Uniprot/SPTREMBLA2CF31, A2CF31_DANRE
ZFINZDB-GENE-060526-217 (atxn2)

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