D. rerio Gene: tubb1 - ENSDARG00000053066 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000053066
Nametubb1
Descriptiontubulin, beta 1 class VI [Source:ZFIN;Acc:ZDB-GENE-110408-5]
OrganismDanio rerio (zebrafish)
Synonym(s)si:ch211-122i22.4

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
2.47e3
  • 2.47e3
91.75
  • 91.75
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
7.34e3
  • 7.34e3
75.44
  • 75.44
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
7.81e3
  • 7.81e3
73.86
  • 73.86
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
8.56e3
  • 8.56e3
  • 9.18e3
71.32
  • 71.32
  • 69.25
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
9.12e3
  • 9.12e3
  • 1.75e4
69.45
  • 69.45
  • 41.35
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
9.55e3
  • 9.55e3
  • 1.19e4
  • 1.22e4
  • 1.44e4
  • 1.86e4
68.02
  • 68.02
  • 60.23
  • 59.29
  • 51.73
  • 37.86
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.07e4
  • 1.07e4
64.32
  • 64.32
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.38e4
  • 1.38e4
53.73
  • 53.73
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.49e4
  • 1.49e4
50.03
  • 50.03
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.62e4
  • 1.62e4
45.73
  • 45.73
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.69e4
  • 1.69e4
43.53
  • 43.53
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.75e4
  • 1.75e4
41.37
  • 41.37
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.80e4
  • 1.80e4
39.76
  • 39.76
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
1.89e4
  • 1.89e4
36.69
  • 36.69
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
2.06e4
  • 2.06e4
31.04
  • 31.04
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.23e4
  • 2.23e4
25.44
  • 25.44
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.29e4
  • 2.29e4
23.36
  • 23.36
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Cross-references

EMBLBX927257
EnsemblENSDARG00000053066 (tubb1)
Uniprot/SPTREMBLE7FC32, E7FC32_DANRE
ZFINZDB-GENE-110408-5 (tubb1)

Do not show this banner again