D. rerio Gene: basp1 - ENSDARG00000053358 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000053358
Namebasp1
Descriptionbrain abundant, membrane attached signal protein 1 [Source:ZFIN;Acc:ZDB-GENE-070424-158]
OrganismDanio rerio (zebrafish)
Synonym(s)b0s538, si:ch211-220f13.1

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000955brain
  • UBERON:0000066fully formed stage
155
  • 155
99.49
  • 99.49
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
330
  • 330
  • 1.07e3
98.90
  • 98.90
  • 96.41
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
504
  • 504
  • 824
  • 5.02e3
  • 7.94e3
  • 8.50e3
98.32
  • 98.32
  • 97.24
  • 83.21
  • 73.43
  • 71.53
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
883
  • 883
  • 2.42e3
97.05
  • 97.05
  • 91.90
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.04e3
  • 1.04e3
96.51
  • 96.51
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
1.19e3
  • 1.19e3
96.02
  • 96.02
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.56e3
  • 1.56e3
94.79
  • 94.79
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.59e3
  • 2.59e3
91.34
  • 91.34
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
3.07e3
  • 3.07e3
89.72
  • 89.72
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
3.12e3
  • 3.12e3
89.56
  • 89.56
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
4.98e3
  • 4.98e3
83.33
  • 83.33
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
5.01e3
  • 5.01e3
  • 5.34e3
83.23
  • 83.23
  • 82.13
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
5.70e3
  • 5.70e3
80.93
  • 80.93
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
8.67e3
  • 8.67e3
70.97
  • 70.97
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.00e4
  • 1.00e4
66.53
  • 66.53
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.33e4
  • 1.33e4
55.60
  • 55.60
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.37e4
  • 1.37e4
54.29
  • 54.29
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.40e4
  • 1.40e4
53.16
  • 53.16
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.50e4
  • 1.50e4
49.62
  • 49.62
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
1.59e4
  • 1.59e4
46.85
  • 46.85
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.74e4
  • 1.74e4
41.68
  • 41.68
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.92e4
  • 1.92e4
35.84
  • 35.84
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Cross-references

EMBLBC115192, BX005083
EnsemblENSDARG00000053358 (basp1)
Uniprot/SWISSPROTBASP1_DANRE, Q1RM09
ZFINZDB-GENE-070424-158 (basp1)

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