D. rerio Gene: cbsa - ENSDARG00000053500 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000053500
Namecbsa
Descriptioncystathionine-beta-synthase a [Source:ZFIN;Acc:ZDB-GENE-050417-367]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:110199
Orthologs(s)23 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002107liver
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
660
  • 660
  • 9.34e3
  • 1.12e4
  • 1.21e4
97.79
  • 97.79
  • 68.74
  • 62.48
  • 59.50
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
2.60e3
  • 2.60e3
91.28
  • 91.28
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
3.89e3
  • 3.89e3
86.98
  • 86.98
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
4.46e3
  • 4.46e3
85.07
  • 85.07
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
5.28e3
  • 5.28e3
82.34
  • 82.34
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
5.88e3
  • 5.88e3
80.31
  • 80.31
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
6.07e3
  • 6.07e3
  • 1.41e4
79.68
  • 79.68
  • 52.77
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
7.39e3
  • 7.39e3
75.25
  • 75.25
AEIR
  • AEIR
UBERON:0004128optic vesicle
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
7.47e3
  • 7.47e3
  • 9.67e3
  • 9.67e3
  • 9.67e3
74.99
  • 74.99
  • 67.63
  • 67.63
  • 67.63
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
7.77e3
  • 7.77e3
73.99
  • 73.99
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
7.92e3
  • 7.92e3
  • 7.99e3
  • 9.40e3
  • 1.00e4
  • 1.53e4
73.50
  • 73.50
  • 73.26
  • 68.53
  • 66.46
  • 48.79
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001264pancreas
  • ZFS:0000037Larval:Day 5
8.30e3
  • 8.30e3
72.22
  • 72.22
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
8.92e3
  • 8.92e3
  • 1.25e4
70.13
  • 70.13
  • 58.13
AEIR
  • AEIR
  • AEIR
UBERON:0003082myotome
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
8.96e3
  • 8.96e3
  • 9.13e3
  • 9.13e3
  • 1.16e4
  • 1.18e4
69.98
  • 69.98
  • 69.43
  • 69.43
  • 61.09
  • 60.50
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2001357alar plate midbrain
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
8.96e3
  • 8.96e3
  • 9.44e3
  • 9.44e3
69.98
  • 69.98
  • 68.40
  • 68.40
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
9.25e3
  • 9.25e3
  • 9.44e3
  • 9.44e3
  • 1.18e4
  • 1.23e4
  • 1.25e4
  • 1.25e4
69.03
  • 69.03
  • 68.40
  • 68.40
  • 60.50
  • 58.80
  • 58.31
  • 58.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
9.46e3
  • 9.46e3
68.34
  • 68.34
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
1.01e4
  • 1.01e4
  • 1.55e4
66.12
  • 66.12
  • 48.24
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.01e4
  • 1.01e4
66.03
  • 66.03
AEIR
  • AEIR
UBERON:2000083ventral mesoderm
  • ZFS:0000026Segmentation:14-19 somites
1.05e4
  • 1.05e4
64.69
  • 64.69
AEIR
  • AEIR
ZFA:0000003adaxial cell (Danio)
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
1.08e4
  • 1.08e4
  • 1.14e4
  • 1.16e4
63.87
  • 63.87
  • 61.75
  • 61.09
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000037Larval:Day 5
1.14e4
  • 1.14e4
  • 1.15e4
  • 1.17e4
  • 1.20e4
  • 1.23e4
61.88
  • 61.88
  • 61.34
  • 60.84
  • 59.98
  • 58.91
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
1.15e4
  • 1.15e4
  • 1.18e4
  • 1.18e4
  • 1.19e4
61.34
  • 61.34
  • 60.39
  • 60.39
  • 60.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.16e4
  • 1.16e4
  • 1.21e4
61.24
  • 61.24
  • 59.35
AEIR
  • AEIR
  • AEIR
UBERON:0003895hypaxial myotome region
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
1.16e4
  • 1.16e4
  • 1.16e4
61.10
  • 61.10
  • 61.10
AEIR
  • AEIR
  • AEIR
UBERON:2000004anterior axial hypoblast
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
1.17e4
  • 1.17e4
  • 1.17e4
  • 1.17e4
  • 1.17e4
  • 1.17e4
  • 1.20e4
60.70
  • 60.70
  • 60.70
  • 60.70
  • 60.70
  • 60.70
  • 59.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007269pectoral appendage musculature
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
1.18e4
  • 1.18e4
  • 1.18e4
60.50
  • 60.50
  • 60.50
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.19e4
  • 1.19e4
60.07
  • 60.07
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
1.54e4
  • 1.54e4
48.46
  • 48.46
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.57e4
  • 1.57e4
47.52
  • 47.52
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.57e4
  • 1.57e4
47.34
  • 47.34
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.69e4
  • 1.69e4
43.43
  • 43.43
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.83e4
  • 1.83e4
38.87
  • 38.87
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi15 species17 genesCompare expression
Bilateria21 species23 genesCompare expression

Orthology information comes from OMA : ENSDARG00000053500.

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Vertebrata1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000053500.

Cross-references

EnsemblENSDARG00000053500 (cbsa)
ZFINZDB-GENE-050417-367 (cbsa)
EMBLBC155149, BX248514
Uniprot/SPTREMBLA9JT04, A9JT04_DANRE, E9QG18, E9QG18_DANRE

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