Gene: pddc1 - ENSDARG00000053609 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000053609
Name	pddc1
Description	Parkinson disease 7 domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-051030-96]
Organism	Danio rerio (zebrafish)
Synonym(s)	zgc:123196
Orthologs(s)	16 orthologs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0000033	head	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000066fully formed stage	2.77e3 2.77e3 1.12e4	90.72 90.72 62.65	AEIR AEIR AEIR
UBERON:0000160	intestine	[+] 1 stage UBERON:0000066fully formed stage	3.42e3 3.42e3	88.56 88.56	AEIR AEIR
UBERON:0000955	brain	[+] 1 stage UBERON:0000066fully formed stage	3.87e3 3.87e3	87.04 87.04	AEIR AEIR
UBERON:0004734	gastrula	[+] 2 stages ZFS:0000019Gastrula:Shield ZFS:0000022Gastrula:Bud	4.26e3 4.26e3 4.54e3	85.74 85.74 84.79	AEIR AEIR AEIR
UBERON:0000970	eye	[+] 1 stage ZFS:0000031Pharyngula:Prim-25	4.33e3 4.33e3	85.50 85.50	AEIR AEIR
UBERON:0002548	larva	[+] 2 stages UBERON:0000069larval stage ZFS:0000037Larval:Day 5	4.37e3 4.37e3 4.48e3	85.39 85.39 85.00	AEIR AEIR AEIR
UBERON:0000922	embryo	[+] 5 stages ZFS:0000029Pharyngula:Prim-5 UBERON:0004707pharyngula stage ZFS:0000037Larval:Day 5 ZFS:0000033Hatching:Long-pec UBERON:0000068embryo stage	4.79e3 4.79e3 4.87e3 6.23e3 7.04e3 8.27e3	83.97 83.97 83.70 79.14 76.43 72.32	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0006860	swim bladder	[+] 1 stage UBERON:0000066fully formed stage	5.06e3 5.06e3	83.06 83.06	AEIR AEIR
UBERON:0007132	head kidney	[+] 1 stage UBERON:0000066fully formed stage	5.23e3 5.23e3	82.50 82.50	AEIR AEIR
CL:0000094	granulocyte	[+] 1 stage UBERON:0000066fully formed stage	5.54e3 5.54e3	81.45 81.45	AEIR AEIR
UBERON:0000992	female gonad	[+] 1 stage UBERON:0000066fully formed stage	5.81e3 5.81e3	80.54 80.54	AEIR AEIR
UBERON:0003982	mature ovarian follicle	[+] 1 stage UBERON:0000066fully formed stage	6.03e3 6.03e3	79.81 79.81	AEIR AEIR
UBERON:0019248	early embryo	[+] 1 stage UBERON:0000107cleavage stage	6.19e3 6.19e3	79.26 79.26	AEIR AEIR
UBERON:0000307	blastula	[+] 2 stages ZFS:0000015Blastula:Dome ZFS:0000011Blastula:1k-cell	6.71e3 6.71e3 7.17e3	77.53 77.53 76.00	AEIR AEIR AEIR
UBERON:0000966	retina	[+] 1 stage ZFS:0000037Larval:Day 5	7.06e3 7.06e3	76.35 76.35	AEIR AEIR
UBERON:0000206	pharyngeal gill	[+] 1 stage UBERON:0000066fully formed stage	7.13e3 7.13e3	76.13 76.13	AEIR AEIR
UBERON:0000948	heart	[+] 2 stages UBERON:0000066fully formed stage ZFS:0000036Larval:Day 4	7.41e3 7.41e3 8.68e3	75.20 75.20 70.94	AEIR AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	7.62e3 7.62e3	74.48 74.48	AEIR AEIR
UBERON:0002106	spleen	[+] 1 stage UBERON:0000066fully formed stage	7.91e3 7.91e3	73.50 73.50	AEIR AEIR
UBERON:0002107	liver	[+] 1 stage UBERON:0000066fully formed stage	7.92e3 7.92e3	73.47 73.47	AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	8.38e3 8.38e3	71.95 71.95	AEIR AEIR
UBERON:0002385	muscle tissue	[+] 1 stage UBERON:0000066fully formed stage	8.83e3 8.83e3	70.44 70.44	AEIR AEIR
UBERON:0000473	testis	[+] 1 stage UBERON:0000066fully formed stage	8.99e3 8.99e3	69.91 69.91	AEIR AEIR
UBERON:0002415	tail	[+] 1 stage UBERON:0000066fully formed stage	1.05e4 1.05e4	64.84 64.84	AEIR AEIR
UBERON:0001630	muscle organ	[+] 1 stage UBERON:0000066fully formed stage	1.08e4 1.08e4	63.68 63.68	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

RNA-Seq data: Bgee

Sources of raw data:

RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Euteleostomi	16 species Homo sapiens (human) Mus musculus (mouse) Gorilla gorilla (gorilla) Macaca mulatta (macaque) Rattus norvegicus (rat) Bos taurus (cattle) Sus scrofa (pig) Equus caballus (horse) Canis lupus familiaris (dog) Felis catus (cat) Cavia porcellus (guinea pig) Monodelphis domestica (opossum) Ornithorhynchus anatinus (platypus) Gallus gallus (chicken) Anolis carolinensis (green anole) Xenopus tropicalis (western clawed frog)	16 genes ENSG00000177225 PDDC1 ENSMUSG00000051007 Pddc1 ENSGGOG00000010750 PDDC1 ENSMMUG00000007511 PDDC1 ENSRNOG00000046382 Pddc1 ENSBTAG00000010348 PDDC1 ENSSSCG00000012846 PDDC1 ENSECAG00000011702 PDDC1 ENSCAFG00000031406 ENSFCAG00000007594 PDDC1 ENSCPOG00000019935 PDDC1 ENSMODG00000019666 PDDC1 ENSOANG00000009139 PDDC1 ENSGALG00000005133 PDDC1 ENSACAG00000015262 PDDC1 ENSXETG00000032548 PDDC1	Compare expression	[+]

Orthology information comes from OMA : ENSDARG00000053609.

Cross-references

Ensembl	ENSDARG00000053609 (pddc1)
ZFIN	ZDB-GENE-051030-96 (pddc1)
EMBL	CU138509
Uniprot/SPTREMBL	F1QPE9, F1QPE9_DANRE, X1WCN8, X1WCN8_DANRE