D. rerio Gene: foxb1b - ENSDARG00000053650 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000053650
Namefoxb1b
Descriptionforkhead box B1b [Source:ZFIN;Acc:ZDB-GENE-990415-77]
OrganismDanio rerio (zebrafish)
Synonym(s)fkd5, fkh5, forkhead-5, foxb1.1, foxb1.1gn, zgc:100768

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
4.28e3
  • 4.28e3
85.68
  • 85.68
AEIR
  • AEIR
ZFA:0000092axis (Danio)
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
5.34e3
  • 5.34e3
  • 5.75e3
  • 5.75e3
82.14
  • 82.14
  • 80.76
  • 80.76
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005068neural rod
  • ZFS:0000026Segmentation:14-19 somites
5.75e3
  • 5.75e3
80.76
  • 80.76
AEIR
  • AEIR
UBERON:0006222future diencephalon
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000025Segmentation:10-13 somites
5.75e3
  • 5.75e3
  • 6.22e3
  • 6.22e3
80.76
  • 80.76
  • 79.16
  • 79.16
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
6.64e3
  • 6.64e3
  • 1.31e4
  • 1.49e4
77.77
  • 77.77
  • 56.22
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
6.82e3
  • 6.82e3
  • 7.55e3
  • 8.66e3
  • 9.69e3
  • 1.23e4
  • 1.46e4
77.18
  • 77.18
  • 74.72
  • 70.99
  • 67.56
  • 58.74
  • 51.02
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2000083ventral mesoderm
  • ZFS:0000026Segmentation:14-19 somites
7.03e3
  • 7.03e3
76.46
  • 76.46
AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
7.12e3
  • 7.12e3
  • 8.30e3
  • 8.40e3
  • 8.96e3
  • 1.08e4
  • 1.14e4
76.18
  • 76.18
  • 72.21
  • 71.86
  • 69.98
  • 63.87
  • 61.75
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0008781blastodisc derived epiblast
  • ZFS:0000022Gastrula:Bud
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0003075neural plate
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
7.86e3
  • 7.86e3
  • 7.86e3
  • 8.54e3
  • 1.15e4
  • 1.20e4
  • 1.26e4
  • 1.26e4
  • 1.26e4
  • 1.26e4
73.67
  • 73.67
  • 73.67
  • 71.41
  • 61.53
  • 59.98
  • 57.68
  • 57.68
  • 57.68
  • 57.68
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
8.01e3
  • 8.01e3
  • 9.71e3
  • 9.71e3
  • 1.02e4
  • 1.09e4
  • 1.41e4
73.19
  • 73.19
  • 67.48
  • 67.48
  • 65.89
  • 63.61
  • 52.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003053ventricular zone
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
8.04e3
  • 8.04e3
  • 8.71e3
73.07
  • 73.07
  • 70.82
AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
8.15e3
  • 8.15e3
72.71
  • 72.71
AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
8.22e3
  • 8.22e3
  • 1.05e4
  • 1.10e4
72.48
  • 72.48
  • 64.98
  • 63.14
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003052midbrain-hindbrain boundary
  • ZFS:0000026Segmentation:14-19 somites
8.40e3
  • 8.40e3
71.86
  • 71.86
AEIR
  • AEIR
UBERON:0001049neural tube
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
9.10e3
  • 9.10e3
  • 9.71e3
  • 9.71e3
69.55
  • 69.55
  • 67.48
  • 67.48
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
9.12e3
  • 9.12e3
  • 9.79e3
  • 1.05e4
  • 1.23e4
  • 1.26e4
  • 1.35e4
  • 1.37e4
  • 1.38e4
  • 1.46e4
  • 1.60e4
69.45
  • 69.45
  • 67.23
  • 64.85
  • 58.77
  • 57.83
  • 54.71
  • 54.24
  • 53.67
  • 51.15
  • 46.51
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001943midbrain tegmentum
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
9.13e3
  • 9.13e3
  • 9.67e3
  • 9.67e3
  • 1.21e4
  • 1.23e4
69.43
  • 69.43
  • 67.63
  • 67.63
  • 59.36
  • 58.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001898hypothalamus
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
9.33e3
  • 9.33e3
  • 9.51e3
  • 9.96e3
  • 1.05e4
  • 1.16e4
68.74
  • 68.74
  • 68.17
  • 66.66
  • 64.99
  • 61.10
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0010285midbrain basal plate
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
9.67e3
  • 9.67e3
  • 9.67e3
  • 9.67e3
67.63
  • 67.63
  • 67.63
  • 67.63
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
9.95e3
  • 9.95e3
66.70
  • 66.70
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0000068embryo stage
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
1.01e4
  • 1.01e4
  • 1.04e4
  • 1.07e4
  • 1.14e4
  • 1.16e4
  • 1.41e4
  • 1.46e4
  • 1.46e4
  • 1.50e4
  • 1.52e4
  • 1.58e4
  • 1.58e4
66.30
  • 66.30
  • 65.18
  • 64.01
  • 61.86
  • 61.12
  • 52.81
  • 51.27
  • 51.01
  • 49.92
  • 49.00
  • 47.24
  • 47.22
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
1.02e4
  • 1.02e4
  • 1.05e4
65.77
  • 65.77
  • 64.69
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000011Blastula:1k-cell
1.13e4
  • 1.13e4
  • 1.35e4
  • 1.69e4
62.18
  • 62.18
  • 54.71
  • 43.28
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
1.20e4
  • 1.20e4
59.84
  • 59.84
AEIR
  • AEIR
UBERON:0002346neurectoderm
  • ZFS:0000022Gastrula:Bud
1.24e4
  • 1.24e4
58.33
  • 58.33
AEIR
  • AEIR
UBERON:2007032midbrain neural rod
  • ZFS:0000024Segmentation:5-9 somites
1.28e4
  • 1.28e4
57.14
  • 57.14
AEIR
  • AEIR
UBERON:0001003skin epidermis
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000029Pharyngula:Prim-5
1.32e4
  • 1.32e4
  • 1.40e4
  • 1.41e4
  • 1.42e4
55.86
  • 55.86
  • 53.10
  • 52.92
  • 52.35
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006238future brain
  • ZFS:0000020Gastrula:75%-epiboly
1.34e4
  • 1.34e4
54.99
  • 54.99
AEIR
  • AEIR
UBERON:0000926mesoderm
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
1.38e4
  • 1.38e4
  • 1.39e4
  • 1.40e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
53.83
  • 53.83
  • 53.31
  • 53.10
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002533post-anal tail bud
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
1.38e4
  • 1.38e4
  • 1.41e4
53.83
  • 53.83
  • 52.75
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.38e4
  • 1.38e4
53.81
  • 53.81
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.41e4
  • 1.41e4
  • 2.84e4
52.80
  • 52.80
  • 4.89
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.44e4
  • 1.44e4
  • 1.67e4
51.92
  • 51.92
  • 43.99
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.52e4
  • 1.52e4
  • 1.54e4
  • 1.56e4
49.26
  • 49.26
  • 48.39
  • 47.90
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.68e4
  • 1.68e4
43.89
  • 43.89
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.72e4
  • 1.72e4
42.48
  • 42.48
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.30e4
  • 2.30e4
22.94
  • 22.94
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLAF052651, BC078426, BX927082
EnsemblENSDARG00000053650 (foxb1b)
Uniprot/SPTREMBLO93312, O93312_DANRE
ZFINZDB-GENE-990415-77 (foxb1b)

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