D. rerio Gene: vgll2b - ENSDARG00000053773 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000053773
Namevgll2b
Descriptionvestigial-like family member 2b [Source:ZFIN;Acc:ZDB-GENE-050809-113]
OrganismDanio rerio (zebrafish)
Synonym(s)vgl-2b, zgc:110098

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
939
  • 939
96.86
  • 96.86
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.53e3
  • 1.53e3
94.89
  • 94.89
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
3.13e3
  • 3.13e3
89.51
  • 89.51
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
5.09e3
  • 5.09e3
  • 5.67e3
  • 7.96e3
  • 8.37e3
  • 1.37e4
82.95
  • 82.95
  • 81.00
  • 73.34
  • 71.97
  • 53.97
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002376cranial muscle
  • ZFS:0000035Larval:Protruding-mouth
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
8.05e3
  • 8.05e3
  • 9.96e3
73.05
  • 73.05
  • 66.67
AEIR
  • AEIR
  • AEIR
UBERON:0002100trunk
  • ZFS:0000027Segmentation:20-25 somites
9.96e3
  • 9.96e3
66.67
  • 66.67
AEIR
  • AEIR
UBERON:0002328notochord
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000024Segmentation:5-9 somites
1.05e4
  • 1.05e4
  • 1.32e4
  • 1.32e4
  • 1.36e4
64.99
  • 64.99
  • 55.97
  • 55.86
  • 54.52
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000189slow muscle cell
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
1.12e4
  • 1.12e4
  • 1.12e4
  • 1.49e4
62.50
  • 62.50
  • 62.49
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000190fast muscle cell
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
1.16e4
  • 1.16e4
  • 1.19e4
61.10
  • 61.10
  • 60.00
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.18e4
  • 1.18e4
60.62
  • 60.62
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
1.31e4
  • 1.31e4
  • 1.37e4
56.24
  • 56.24
  • 54.13
AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000024Segmentation:5-9 somites
1.31e4
  • 1.31e4
  • 1.49e4
56.24
  • 56.24
  • 49.97
AEIR
  • AEIR
  • AEIR
ZFA:0000003adaxial cell (Danio)
  • ZFS:0000024Segmentation:5-9 somites
1.33e4
  • 1.33e4
55.53
  • 55.53
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
1.36e4
  • 1.36e4
54.39
  • 54.39
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.41e4
  • 1.41e4
  • 1.55e4
52.71
  • 52.71
  • 48.19
AEIR
  • AEIR
  • AEIR
UBERON:0008897fin
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:0001890forebrain
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
49.97
  • 49.97
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.59e4
  • 1.59e4
46.69
  • 46.69
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.76e4
  • 1.76e4
41.07
  • 41.07
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.97e4
  • 1.97e4
33.98
  • 33.98
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EMBLFP015965
EnsemblENSDARG00000053773 (vgll2b)
Uniprot/SPTREMBLF1QR87, F1QR87_DANRE
ZFINZDB-GENE-050809-113 (vgll2b)

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