D. rerio Gene: vtnb - ENSDARG00000053831 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000053831
Namevtnb
Descriptionvitronectin b [Source:ZFIN;Acc:ZDB-GENE-041116-1]
OrganismDanio rerio (zebrafish)
Synonym(s)vtn

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002107liver
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000036Larval:Day 4
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
305
  • 305
  • 6.54e3
  • 1.10e4
  • 1.12e4
  • 1.12e4
  • 1.17e4
  • 1.31e4
  • 1.35e4
98.98
  • 98.98
  • 78.12
  • 63.32
  • 62.49
  • 62.49
  • 60.70
  • 56.23
  • 54.73
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.40e3
  • 1.40e3
95.33
  • 95.33
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0004707pharyngula stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
1.95e3
  • 1.95e3
  • 2.91e3
  • 3.99e3
  • 4.37e3
  • 4.62e3
  • 5.23e3
  • 5.40e3
  • 1.35e4
  • 1.38e4
  • 1.49e4
93.46
  • 93.46
  • 90.26
  • 86.64
  • 85.37
  • 84.55
  • 82.49
  • 81.93
  • 54.86
  • 53.71
  • 50.02
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
2.71e3
  • 2.71e3
90.93
  • 90.93
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0000068embryo stage
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000104life cycle
2.98e3
  • 2.98e3
  • 3.38e3
  • 3.96e3
  • 4.97e3
  • 5.28e3
  • 8.57e3
  • 8.62e3
  • 1.03e4
  • 1.08e4
  • 1.25e4
  • 1.34e4
  • 1.38e4
  • 1.39e4
  • 1.45e4
  • 1.50e4
90.02
  • 90.02
  • 88.69
  • 86.75
  • 83.37
  • 82.31
  • 71.32
  • 71.13
  • 65.61
  • 63.88
  • 58.10
  • 55.29
  • 53.65
  • 53.44
  • 51.60
  • 49.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
3.20e3
  • 3.20e3
  • 4.24e3
  • 4.70e3
89.27
  • 89.27
  • 85.81
  • 84.28
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
5.60e3
  • 5.60e3
81.24
  • 81.24
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
6.17e3
  • 6.17e3
79.33
  • 79.33
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
7.23e3
  • 7.23e3
75.80
  • 75.80
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
8.21e3
  • 8.21e3
  • 1.47e4
72.50
  • 72.50
  • 50.78
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
9.64e3
  • 9.64e3
  • 9.87e3
67.72
  • 67.72
  • 66.96
AEIR
  • AEIR
  • AEIR
UBERON:2000088YSL
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
1.05e4
  • 1.05e4
  • 1.05e4
  • 1.12e4
  • 1.28e4
  • 1.28e4
  • 1.31e4
  • 1.32e4
  • 1.32e4
64.69
  • 64.69
  • 64.69
  • 62.50
  • 57.14
  • 57.14
  • 56.23
  • 55.86
  • 55.86
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.09e4
  • 1.09e4
63.46
  • 63.46
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
1.16e4
  • 1.16e4
  • 1.22e4
  • 1.31e4
  • 1.39e4
61.10
  • 61.10
  • 59.08
  • 56.24
  • 53.55
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.21e4
  • 1.21e4
  • 1.43e4
  • 1.83e4
59.59
  • 59.59
  • 52.11
  • 38.74
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003894liver primordium
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
1.24e4
  • 1.24e4
  • 1.33e4
  • 1.33e4
58.32
  • 58.32
  • 55.55
  • 55.55
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
1.34e4
  • 1.34e4
55.16
  • 55.16
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.67e4
  • 1.67e4
44.08
  • 44.08
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
1.72e4
  • 1.72e4
  • 1.75e4
42.29
  • 42.29
  • 41.42
AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.70
  • 40.70
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.97e4
  • 1.97e4
34.16
  • 34.16
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
2.02e4
  • 2.02e4
32.28
  • 32.28
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.06e4
  • 2.06e4
31.08
  • 31.08
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLBX005137, CT027811
EnsemblENSDARG00000053831 (vtnb)
Uniprot/SPTREMBLF1Q5D8, F1Q5D8_DANRE
ZFINZDB-GENE-041116-1 (vtnb)

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