D. rerio Gene: med13a - ENSDARG00000053884 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000053884
Namemed13a
Descriptionmediator complex subunit 13a [Source:ZFIN;Acc:ZDB-GENE-070627-13]
OrganismDanio rerio (zebrafish)
Synonym(s)im:7158513, med13, si:dkeyp-53h3.2, thrap1
Orthologs(s)25 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
2.66e3
  • 2.66e3
  • 2.68e3
  • 2.92e3
  • 3.15e3
91.09
  • 91.09
  • 91.04
  • 90.23
  • 89.45
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000030Pharyngula:Prim-15
3.91e3
  • 3.91e3
  • 4.80e3
  • 5.31e3
  • 6.09e3
  • 6.71e3
  • 6.97e3
  • 8.79e3
  • 8.97e3
  • 9.42e3
  • 1.13e4
86.91
  • 86.91
  • 83.95
  • 82.23
  • 79.59
  • 77.53
  • 76.65
  • 70.55
  • 69.96
  • 68.46
  • 62.19
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
4.01e3
  • 4.01e3
  • 4.98e3
  • 5.51e3
  • 6.10e3
  • 6.62e3
86.58
  • 86.58
  • 83.31
  • 81.56
  • 79.58
  • 77.85
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
4.51e3
  • 4.51e3
84.89
  • 84.89
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
4.59e3
  • 4.59e3
  • 5.06e3
  • 6.09e3
  • 6.21e3
  • 6.28e3
  • 6.34e3
84.65
  • 84.65
  • 83.06
  • 79.60
  • 79.20
  • 78.98
  • 78.77
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
4.72e3
  • 4.72e3
  • 7.29e3
84.19
  • 84.19
  • 75.59
AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
4.76e3
  • 4.76e3
84.05
  • 84.05
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
4.81e3
  • 4.81e3
83.91
  • 83.91
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
4.97e3
  • 4.97e3
83.38
  • 83.38
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000023Segmentation:1-4 somites
  • UBERON:0004707pharyngula stage
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000015Blastula:Dome
  • UBERON:0000106zygote stage
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000036Larval:Day 4
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
4.98e3
  • 4.98e3
  • 6.54e3
  • 6.55e3
  • 6.64e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.97e3
  • 6.99e3
  • 7.03e3
  • 7.03e3
  • 7.16e3
  • 7.47e3
  • 7.47e3
  • 7.64e3
  • 7.91e3
  • 8.05e3
  • 8.46e3
  • 8.91e3
  • 8.96e3
  • 8.96e3
  • 9.04e3
  • 9.06e3
  • 9.25e3
  • 9.34e3
  • 1.22e4
  • 1.26e4
  • 1.49e4
  • 1.50e4
83.33
  • 83.33
  • 78.12
  • 78.06
  • 77.77
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 76.66
  • 76.59
  • 76.48
  • 76.46
  • 76.02
  • 74.99
  • 74.99
  • 74.41
  • 73.52
  • 73.04
  • 71.68
  • 70.17
  • 69.99
  • 69.99
  • 69.72
  • 69.65
  • 69.02
  • 68.73
  • 59.11
  • 57.85
  • 50.20
  • 49.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
5.06e3
  • 5.06e3
83.07
  • 83.07
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
5.34e3
  • 5.34e3
82.11
  • 82.11
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
5.38e3
  • 5.38e3
81.97
  • 81.97
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
5.62e3
  • 5.62e3
81.18
  • 81.18
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
5.95e3
  • 5.95e3
80.07
  • 80.07
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
6.33e3
  • 6.33e3
78.79
  • 78.79
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
6.37e3
  • 6.37e3
  • 9.88e3
78.67
  • 78.67
  • 66.90
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
6.50e3
  • 6.50e3
78.25
  • 78.25
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
7.01e3
  • 7.01e3
76.53
  • 76.53
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
7.04e3
  • 7.04e3
76.42
  • 76.42
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
7.07e3
  • 7.07e3
76.35
  • 76.35
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
7.30e3
  • 7.30e3
75.57
  • 75.57
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
7.42e3
  • 7.42e3
75.17
  • 75.17
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
7.71e3
  • 7.71e3
  • 1.25e4
74.18
  • 74.18
  • 58.15
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
7.91e3
  • 7.91e3
73.53
  • 73.53
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
8.62e3
  • 8.62e3
71.15
  • 71.15
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
8.66e3
  • 8.66e3
71.00
  • 71.00
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
8.95e3
  • 8.95e3
70.04
  • 70.04
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
9.22e3
  • 9.22e3
69.14
  • 69.14
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
9.42e3
  • 9.42e3
  • 9.52e3
  • 1.06e4
68.46
  • 68.46
  • 68.12
  • 64.62
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
9.72e3
  • 9.72e3
67.46
  • 67.46
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi19 species19 genesCompare expression
Bilateria25 species25 genesCompare expression

Orthology information comes from OMA : ENSDARG00000053884.

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Vertebrata1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000053884.

Cross-references

EnsemblENSDARG00000053884 (med13a)
ZFINZDB-GENE-070627-13 (med13a)
EMBLBX000486, CR925779
Uniprot/SPTREMBLE7FCQ8, E7FCQ8_DANRE, E9QD13, E9QD13_DANRE

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