D. rerio Gene: slc30a1b - ENSDARG00000053896 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000053896
Nameslc30a1b
Descriptionsolute carrier family 30 (zinc transporter), member 1b [Source:ZFIN;Acc:ZDB-GENE-070424-43]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:162909, znt1
Orthologs(s)7 orthologs
Paralog(s)5 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
1.40e3
  • 1.40e3
  • 9.97e3
95.33
  • 95.33
  • 66.60
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
4.25e3
  • 4.25e3
85.77
  • 85.77
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
5.71e3
  • 5.71e3
  • 7.87e3
  • 1.14e4
  • 1.56e4
  • 2.00e4
80.88
  • 80.88
  • 73.64
  • 61.90
  • 47.82
  • 33.16
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000049segmentation
  • UBERON:0000104life cycle
8.38e3
  • 8.38e3
  • 1.49e4
  • 1.50e4
71.93
  • 71.93
  • 49.95
  • 49.92
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.06e4
  • 1.06e4
64.63
  • 64.63
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.15e4
  • 1.15e4
  • 1.74e4
61.55
  • 61.55
  • 41.58
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
1.18e4
  • 1.18e4
  • 1.22e4
60.54
  • 60.54
  • 59.02
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.21e4
  • 1.21e4
59.35
  • 59.35
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.42e4
  • 1.42e4
52.30
  • 52.30
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.59e4
  • 1.59e4
46.67
  • 46.67
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.70e4
  • 1.70e4
43.06
  • 43.06
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.83e4
  • 1.83e4
38.61
  • 38.61
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.00e4
  • 2.00e4
33.08
  • 33.08
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
2.17e4
  • 2.17e4
27.36
  • 27.36
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.17e4
  • 2.17e4
27.33
  • 27.33
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.29e4
  • 2.29e4
23.32
  • 23.32
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.30e4
  • 2.30e4
22.82
  • 22.82
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs

Orthology information comes from OMA : ENSDARG00000053896.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata1 geneCompare expression
Opisthokonta5 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000053896.

Cross-references

EnsemblENSDARG00000053896 (slc30a1b)
ZFINZDB-GENE-070424-43 (slc30a1b)
EMBLCR318625
Uniprot/SPTREMBLF1QZA0, F1QZA0_DANRE

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