D. rerio Gene: htr1b - ENSDARG00000053987 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000053987
Namehtr1b
Description5-hydroxytryptamine (serotonin) receptor 1B [Source:ZFIN;Acc:ZDB-GENE-081022-141]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:194666, zgc:194690

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000468multi-cellular organism
  • ZFS:0000022Gastrula:Bud
  • UBERON:00072334 cell stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000020Gastrula:75%-epiboly
6.64e3
  • 6.64e3
  • 6.79e3
  • 7.03e3
  • 7.47e3
77.77
  • 77.77
  • 77.27
  • 76.46
  • 74.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000029Pharyngula:Prim-5
9.94e3
  • 9.94e3
  • 1.34e4
66.72
  • 66.72
  • 54.99
AEIR
  • AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
1.12e4
  • 1.12e4
  • 1.49e4
62.50
  • 62.50
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0001042chordate pharynx
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
1.27e4
  • 1.27e4
  • 1.38e4
57.47
  • 57.47
  • 53.83
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
1.28e4
  • 1.28e4
  • 1.29e4
57.12
  • 57.12
  • 56.79
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
1.32e4
  • 1.32e4
  • 1.34e4
55.91
  • 55.91
  • 55.02
AEIR
  • AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
1.34e4
  • 1.34e4
  • 1.41e4
55.24
  • 55.24
  • 52.75
AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
1.34e4
  • 1.34e4
  • 1.36e4
55.24
  • 55.24
  • 54.52
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.40e4
  • 1.40e4
  • 2.10e4
52.96
  • 52.96
  • 29.78
AEIR
  • AEIR
  • AEIR
UBERON:0002043dorsal raphe nucleus
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0009776intermediate reticular formation
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.73e4
  • 1.73e4
  • 2.24e4
42.14
  • 42.14
  • 25.09
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
1.73e4
  • 1.73e4
  • 1.98e4
  • 2.36e4
41.92
  • 41.92
  • 33.73
  • 20.86
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.81e4
  • 1.81e4
39.28
  • 39.28
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.01e4
  • 2.01e4
32.65
  • 32.65
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
2.03e4
  • 2.03e4
32.14
  • 32.14
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EMBLBX005484
EnsemblENSDARG00000053987 (htr1b)
Uniprot/SPTREMBLF6NR34, F6NR34_DANRE
ZFINZDB-GENE-081022-141 (htr1b)

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