D. rerio Gene: hoxb8b - ENSDARG00000054025 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000054025
Namehoxb8b
Descriptionhomeobox B8b [Source:ZFIN;Acc:ZDB-GENE-980526-291]
OrganismDanio rerio (zebrafish)
Synonym(s)hoxa8, o57360, q4pr94, q9pwm1, z-9

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
5.79e3
  • 5.79e3
  • 5.91e3
  • 7.81e3
  • 8.06e3
  • 1.31e4
80.63
  • 80.63
  • 80.21
  • 73.87
  • 73.02
  • 55.97
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
6.23e3
  • 6.23e3
  • 1.19e4
79.13
  • 79.13
  • 60.23
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
8.94e3
  • 8.94e3
70.07
  • 70.07
AEIR
  • AEIR
UBERON:0001017central nervous system
  • ZFS:0000025Segmentation:10-13 somites
9.96e3
  • 9.96e3
66.67
  • 66.67
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.46e4
  • 1.46e4
51.01
  • 51.01
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.47e4
  • 1.47e4
50.80
  • 50.80
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.58e4
  • 1.58e4
47.03
  • 47.03
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.61e4
  • 1.61e4
45.95
  • 45.95
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.69e4
  • 1.69e4
43.41
  • 43.41
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.80e4
  • 1.80e4
39.83
  • 39.83
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
2.03e4
  • 2.03e4
31.98
  • 31.98
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
2.08e4
  • 2.08e4
30.37
  • 30.37
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.29e4
  • 2.29e4
23.25
  • 23.25
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

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