D. rerio Gene: hoxb1b - ENSDARG00000054033 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000054033
Namehoxb1b
Descriptionhomeobox B1b [Source:ZFIN;Acc:ZDB-GENE-980526-290]
OrganismDanio rerio (zebrafish)
Synonym(s)cb249, hoxa-1, hoxa1, id:ibd5001

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000019Gastrula:Shield
875
  • 875
  • 1.84e3
  • 2.66e3
  • 6.41e3
  • 1.41e4
  • 1.72e4
97.07
  • 97.07
  • 93.84
  • 91.08
  • 78.54
  • 52.85
  • 42.53
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000022Gastrula:Bud
1.48e3
  • 1.48e3
  • 1.34e4
95.05
  • 95.05
  • 54.99
AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000049segmentation
  • ZFS:0000040Larval:Days 14-20
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
  • ZFS:0000019Gastrula:Shield
1.60e3
  • 1.60e3
  • 1.74e3
  • 3.02e3
  • 3.37e3
  • 4.03e3
  • 6.31e3
  • 7.79e3
  • 9.99e3
  • 1.23e4
  • 1.36e4
  • 1.45e4
  • 1.45e4
  • 1.47e4
  • 1.48e4
  • 1.49e4
94.64
  • 94.64
  • 94.16
  • 89.90
  • 88.71
  • 86.50
  • 78.86
  • 73.91
  • 66.54
  • 58.82
  • 54.43
  • 51.51
  • 51.35
  • 50.90
  • 50.61
  • 50.07
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
1.74e3
  • 1.74e3
  • 1.21e4
  • 1.22e4
94.17
  • 94.17
  • 59.50
  • 59.06
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
1.85e3
  • 1.85e3
  • 1.08e4
93.80
  • 93.80
  • 63.76
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
2.87e3
  • 2.87e3
  • 3.35e3
  • 3.77e3
  • 4.00e3
  • 4.88e3
  • 5.74e3
  • 8.54e3
  • 9.19e3
  • 9.39e3
  • 9.62e3
90.41
  • 90.41
  • 88.77
  • 87.37
  • 86.62
  • 83.67
  • 80.79
  • 71.41
  • 69.24
  • 68.56
  • 67.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007284presumptive neural plate
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
3.73e3
  • 3.73e3
  • 1.49e4
87.50
  • 87.50
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
3.85e3
  • 3.85e3
87.11
  • 87.11
AEIR
  • AEIR
UBERON:0002346neurectoderm
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
4.98e3
  • 4.98e3
  • 1.24e4
  • 1.33e4
83.33
  • 83.33
  • 58.33
  • 55.55
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000029Pharyngula:Prim-5
4.98e3
  • 4.98e3
  • 5.98e3
  • 6.40e3
  • 6.64e3
  • 6.89e3
  • 8.79e3
  • 1.08e4
83.33
  • 83.33
  • 79.99
  • 78.56
  • 77.77
  • 76.92
  • 70.57
  • 63.87
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003075neural plate
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000023Segmentation:1-4 somites
6.97e3
  • 6.97e3
  • 8.04e3
  • 1.15e4
  • 1.15e4
  • 1.26e4
  • 1.26e4
  • 1.26e4
  • 1.26e4
  • 1.28e4
76.66
  • 76.66
  • 73.07
  • 61.53
  • 61.53
  • 57.87
  • 57.87
  • 57.68
  • 57.68
  • 57.12
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003081lateral plate mesoderm
  • ZFS:0000026Segmentation:14-19 somites
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
8.06e3
  • 8.06e3
73.02
  • 73.02
AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
8.83e3
  • 8.83e3
  • 9.51e3
  • 9.61e3
  • 1.18e4
  • 1.23e4
  • 1.27e4
  • 1.27e4
70.44
  • 70.44
  • 68.16
  • 67.83
  • 60.50
  • 58.80
  • 57.47
  • 57.47
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001049neural tube
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
8.96e3
  • 8.96e3
  • 1.17e4
  • 1.27e4
  • 1.27e4
69.98
  • 69.98
  • 60.84
  • 57.47
  • 57.47
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000029Pharyngula:Prim-5
8.96e3
  • 8.96e3
  • 9.10e3
  • 1.20e4
  • 1.26e4
  • 1.28e4
69.98
  • 69.98
  • 69.55
  • 59.98
  • 57.87
  • 57.11
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
9.33e3
  • 9.33e3
68.77
  • 68.77
AEIR
  • AEIR
CL:0000540neuron
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
9.34e3
  • 9.34e3
  • 9.34e3
  • 1.28e4
  • 1.29e4
68.74
  • 68.74
  • 68.74
  • 57.13
  • 56.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002533post-anal tail bud
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000027Segmentation:20-25 somites
9.44e3
  • 9.44e3
  • 1.16e4
  • 1.16e4
  • 1.25e4
  • 1.36e4
68.40
  • 68.40
  • 61.09
  • 61.09
  • 58.31
  • 54.53
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005886post-hyoid pharyngeal arch skeleton
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
9.44e3
  • 9.44e3
  • 9.44e3
  • 1.27e4
  • 1.27e4
  • 1.28e4
68.40
  • 68.40
  • 68.40
  • 57.47
  • 57.47
  • 57.12
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001017central nervous system
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
9.96e3
  • 9.96e3
  • 1.34e4
  • 1.39e4
  • 1.39e4
  • 1.41e4
66.67
  • 66.67
  • 55.24
  • 53.55
  • 53.31
  • 52.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007277presumptive hindbrain
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
9.96e3
  • 9.96e3
  • 1.49e4
66.67
  • 66.67
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0008781blastodisc derived epiblast
  • ZFS:0000020Gastrula:75%-epiboly
9.96e3
  • 9.96e3
66.67
  • 66.67
AEIR
  • AEIR
UBERON:0009614hindbrain neural plate
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000022Gastrula:Bud
9.96e3
  • 9.96e3
  • 1.15e4
  • 1.39e4
  • 1.49e4
66.67
  • 66.67
  • 61.53
  • 53.55
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.00e4
  • 1.00e4
  • 1.97e4
66.46
  • 66.46
  • 33.90
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
1.01e4
  • 1.01e4
  • 1.06e4
  • 1.28e4
66.33
  • 66.33
  • 64.55
  • 57.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007135neural keel
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
1.09e4
  • 1.09e4
  • 1.34e4
  • 1.34e4
  • 1.34e4
63.63
  • 63.63
  • 54.99
  • 54.99
  • 54.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0008896post-hyoid pharyngeal arch
  • ZFS:0000029Pharyngula:Prim-5
1.12e4
  • 1.12e4
62.50
  • 62.50
AEIR
  • AEIR
UBERON:2007042spinal cord neural tube
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
1.12e4
  • 1.12e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
62.50
  • 62.50
  • 50.00
  • 50.00
  • 50.00
  • 50.00
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002541germ ring
  • ZFS:0000019Gastrula:Shield
1.12e4
  • 1.12e4
62.49
  • 62.49
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
1.18e4
  • 1.18e4
60.48
  • 60.48
AEIR
  • AEIR
UBERON:0006238future brain
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
1.19e4
  • 1.19e4
  • 1.19e4
  • 1.34e4
  • 1.34e4
59.99
  • 59.99
  • 59.99
  • 54.99
  • 54.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002328notochord
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
1.20e4
  • 1.20e4
  • 1.22e4
  • 1.22e4
59.98
  • 59.98
  • 59.06
  • 59.06
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004879marginal zone of embryo
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
1.26e4
  • 1.26e4
  • 1.34e4
  • 1.39e4
  • 1.40e4
57.87
  • 57.87
  • 55.24
  • 53.55
  • 53.10
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
ZFA:0000092axis (Danio)
  • ZFS:0000022Gastrula:Bud
1.33e4
  • 1.33e4
55.53
  • 55.53
AEIR
  • AEIR
UBERON:0000924ectoderm
  • ZFS:0000023Segmentation:1-4 somites
1.37e4
  • 1.37e4
54.15
  • 54.15
AEIR
  • AEIR
UBERON:0000925endoderm
  • ZFS:0000027Segmentation:20-25 somites
1.37e4
  • 1.37e4
54.15
  • 54.15
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.44e4
  • 1.44e4
51.74
  • 51.74
AEIR
  • AEIR
UBERON:2007023posterior neural keel
  • ZFS:0000022Gastrula:Bud
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0007291presumptive rhombomere 4
  • ZFS:0000022Gastrula:Bud
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0007292presumptive rhombomere 5
  • ZFS:0000023Segmentation:1-4 somites
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.55e4
  • 1.55e4
48.18
  • 48.18
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.63e4
  • 1.63e4
45.31
  • 45.31
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.72e4
  • 1.72e4
42.37
  • 42.37
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.72e4
  • 1.72e4
42.32
  • 42.32
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.74e4
  • 1.74e4
41.61
  • 41.61
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.77
  • 40.77
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.79e4
  • 1.79e4
40.14
  • 40.14
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.84e4
  • 1.84e4
  • 2.34e4
38.54
  • 38.54
  • 21.51
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.87e4
  • 1.87e4
37.50
  • 37.50
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.95e4
  • 1.95e4
34.78
  • 34.78
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.04e4
  • 2.04e4
31.53
  • 31.53
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
2.19e4
  • 2.19e4
26.58
  • 26.58
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLBX001014
EnsemblENSDARG00000054033 (hoxb1b)
Uniprot/SPTREMBLE9QHF1, E9QHF1_DANRE
ZFINZDB-GENE-980526-290 (hoxb1b)

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