D. rerio Gene: zgc:153219 - ENSDARG00000054054 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000054054
Namezgc:153219
Descriptionzgc:153219 [Source:ZFIN;Acc:ZDB-GENE-060929-144]
OrganismDanio rerio (zebrafish)

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
1.16e4
  • 1.16e4
  • 1.28e4
61.22
  • 61.22
  • 57.08
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.17e4
  • 1.17e4
60.84
  • 60.84
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.24e4
  • 1.24e4
58.63
  • 58.63
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
1.36e4
  • 1.36e4
  • 1.48e4
  • 1.62e4
  • 1.87e4
  • 2.19e4
54.50
  • 54.50
  • 50.51
  • 45.69
  • 37.50
  • 26.58
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.43e4
  • 1.43e4
52.08
  • 52.08
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.46e4
  • 1.46e4
50.96
  • 50.96
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
1.58e4
  • 1.58e4
46.96
  • 46.96
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
1.72e4
  • 1.72e4
42.44
  • 42.44
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.74e4
  • 1.74e4
  • 2.16e4
41.71
  • 41.71
  • 27.83
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.76
  • 40.76
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.81e4
  • 1.81e4
39.47
  • 39.47
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.90e4
  • 1.90e4
36.26
  • 36.26
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.18e4
  • 2.18e4
27.15
  • 27.15
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
2.24e4
  • 2.24e4
24.99
  • 24.99
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Cross-references

EMBLBX571811
EnsemblENSDARG00000054054 (zgc:153219)
Uniprot/SPTREMBLF1QYP1, F1QYP1_DANRE
ZFINZDB-GENE-060929-144 (zgc:153219)

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