D. rerio Gene: ripply1 - ENSDARG00000054103 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000054103
Nameripply1
Descriptionripply transcriptional repressor 1 [Source:ZFIN;Acc:ZDB-GENE-060113-1]
OrganismDanio rerio (zebrafish)

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
2.75e3
  • 2.75e3
  • 4.53e3
90.80
  • 90.80
  • 84.83
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
6.77e3
  • 6.77e3
  • 9.02e3
  • 1.19e4
  • 1.68e4
  • 1.72e4
77.35
  • 77.35
  • 69.80
  • 60.12
  • 43.88
  • 42.57
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2000072somite 1
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
7.47e3
  • 7.47e3
  • 1.49e4
75.00
  • 75.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
8.09e3
  • 8.09e3
  • 1.06e4
  • 1.29e4
72.90
  • 72.90
  • 64.56
  • 56.86
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000022Gastrula:Bud
8.09e3
  • 8.09e3
  • 9.51e3
  • 1.35e4
  • 1.49e4
72.90
  • 72.90
  • 68.16
  • 54.73
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
8.74e3
  • 8.74e3
70.72
  • 70.72
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.07e4
  • 1.07e4
64.19
  • 64.19
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.13e4
  • 1.13e4
  • 2.33e4
62.33
  • 62.33
  • 21.92
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
1.16e4
  • 1.16e4
61.13
  • 61.13
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.22e4
  • 1.22e4
  • 1.55e4
59.16
  • 59.16
  • 48.16
AEIR
  • AEIR
  • AEIR
UBERON:0003062primitive knot
  • ZFS:0000019Gastrula:Shield
1.22e4
  • 1.22e4
59.08
  • 59.08
AEIR
  • AEIR
UBERON:0007285presumptive paraxial mesoderm
  • ZFS:0000021Gastrula:90%-epiboly
1.24e4
  • 1.24e4
58.33
  • 58.33
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.31e4
  • 1.31e4
  • 1.68e4
56.25
  • 56.25
  • 43.84
AEIR
  • AEIR
  • AEIR
UBERON:0002533post-anal tail bud
  • ZFS:0000026Segmentation:14-19 somites
1.34e4
  • 1.34e4
55.24
  • 55.24
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.34e4
  • 1.34e4
55.11
  • 55.11
AEIR
  • AEIR
UBERON:2000728somite 2
  • ZFS:0000025Segmentation:10-13 somites
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2000732somite 3
  • ZFS:0000025Segmentation:10-13 somites
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.58e4
  • 1.58e4
47.24
  • 47.24
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.63e4
  • 1.63e4
45.43
  • 45.43
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.67e4
  • 1.67e4
44.07
  • 44.07
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.76e4
  • 1.76e4
40.94
  • 40.94
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.81e4
  • 1.81e4
39.42
  • 39.42
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.84e4
  • 1.84e4
38.35
  • 38.35
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.90e4
  • 1.90e4
36.42
  • 36.42
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.99e4
  • 1.99e4
33.45
  • 33.45
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.30e4
  • 2.30e4
22.91
  • 22.91
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EMBLBX530030
EnsemblENSDARG00000054103 (ripply1)
Uniprot/SPTREMBLE9QBL5, E9QBL5_DANRE, F1QN21, F1QN21_DANRE
ZFINZDB-GENE-060113-1 (ripply1)

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