D. rerio Gene: htr1d - ENSDARG00000054124 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000054124
Namehtr1d
Description5-hydroxytryptamine (serotonin) receptor 1D, G protein-coupled [Source:ZFIN;Acc:ZDB-GENE-090409-3]
OrganismDanio rerio (zebrafish)
Synonym(s)htr1bd

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:2000440superior raphe nucleus
  • ZFS:0000035Larval:Protruding-mouth
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
9.72e3
  • 9.72e3
  • 1.36e4
67.44
  • 67.44
  • 54.53
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
1.06e4
  • 1.06e4
64.41
  • 64.41
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • ZFS:0000035Larval:Protruding-mouth
1.31e4
  • 1.31e4
56.24
  • 56.24
AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000035Larval:Protruding-mouth
1.37e4
  • 1.37e4
54.15
  • 54.15
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
1.44e4
  • 1.44e4
51.87
  • 51.87
AEIR
  • AEIR
UBERON:2000633caudal tuberculum
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:0001943midbrain tegmentum
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
1.50e4
  • 1.50e4
  • 2.23e4
  • 2.38e4
  • 2.39e4
49.61
  • 49.61
  • 25.21
  • 20.23
  • 19.95
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.56e4
  • 1.56e4
  • 2.17e4
47.72
  • 47.72
  • 27.17
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.29e4
  • 2.29e4
23.40
  • 23.40
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.33e4
  • 2.33e4
21.91
  • 21.91
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EMBLBX088703
EnsemblENSDARG00000054124 (htr1d)
Uniprot/SPTREMBLF1QAQ7, F1QAQ7_DANRE
ZFINZDB-GENE-090409-3 (htr1d)

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