Gene: valopb - ENSDARG00000054181 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000054181
Name	valopb
Description	vertebrate ancient long opsin b [Source:ZFIN;Acc:ZDB-GENE-040724-41]
Organism	Danio rerio (zebrafish)
Synonym(s)	bz1c10.4, si:rp71-1c10.4, va2, valop
Orthologs(s)	3 orthologs
Paralog(s)	2 paralogs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
CL:0000561	amacrine cell	[+] 2 stages ZFS:0000036Larval:Day 4 ZFS:0000035Larval:Protruding-mouth	7.47e3 7.47e3 1.49e4	75.00 75.00 50.00	AEIR AEIR AEIR
UBERON:0000966	retina	[+] 1 stage ZFS:0000037Larval:Day 5	8.45e3 8.45e3	71.69 71.69	AEIR AEIR
UBERON:0002028	hindbrain	[+] 3 stages ZFS:0000029Pharyngula:Prim-5 ZFS:0000035Larval:Protruding-mouth ZFS:0000036Larval:Day 4	1.28e4 1.28e4 1.39e4 1.49e4	57.11 57.11 53.55 50.00	AEIR AEIR AEIR AEIR
UBERON:0001890	forebrain	[+] 1 stage ZFS:0000033Hatching:Long-pec	1.29e4 1.29e4	56.65 56.65	AEIR AEIR
UBERON:0001904	habenula	[+] 3 stages ZFS:0000033Hatching:Long-pec ZFS:0000035Larval:Protruding-mouth ZFS:0000036Larval:Day 4	1.31e4 1.31e4 1.49e4 1.49e4	56.24 56.24 50.00 49.99	AEIR AEIR AEIR AEIR
UBERON:0001891	midbrain	[+] 2 stages ZFS:0000035Larval:Protruding-mouth ZFS:0000036Larval:Day 4	1.34e4 1.34e4 1.49e4	54.99 54.99 50.00	AEIR AEIR AEIR
UBERON:0000992	female gonad	[+] 1 stage UBERON:0000066fully formed stage	1.74e4 1.74e4	41.83 41.83	AEIR AEIR
UBERON:0000033	head	[+] 2 stages UBERON:0000066fully formed stage ZFS:0000037Larval:Day 5	1.76e4 1.76e4 1.86e4	40.93 40.93 37.72	AEIR AEIR AEIR
UBERON:0002415	tail	[+] 1 stage UBERON:0000066fully formed stage	1.91e4 1.91e4	36.05 36.05	AEIR AEIR
UBERON:0000955	brain	[+] 1 stage UBERON:0000066fully formed stage	1.93e4 1.93e4	35.31 35.31	AEIR AEIR
UBERON:0000970	eye	[+] 1 stage ZFS:0000031Pharyngula:Prim-25	1.98e4 1.98e4	33.87 33.87	AEIR AEIR
UBERON:0000922	embryo	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000068embryo stage	1.99e4 1.99e4 2.16e4	33.51 33.51 27.58	AEIR AEIR AEIR
UBERON:0002548	larva	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000069larval stage	2.10e4 2.10e4 2.19e4	29.61 29.61 26.62	AEIR AEIR AEIR
UBERON:0006860	swim bladder	[+] 1 stage UBERON:0000066fully formed stage	2.21e4 2.21e4	26.13 26.13	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

In situ hybridization data: ZFIN
RNA-Seq data: Bgee

Sources of raw data:

In situ hybridization data: ZFIN
RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Euteleostomi	3 species Gallus gallus (chicken) Anolis carolinensis (green anole) Xenopus tropicalis (western clawed frog)	3 genes ENSGALG00000010513 TCTN3 ENSACAG00000005789 ENSXETG00000014777	Compare expression	[+]

Orthology information comes from OMA : ENSDARG00000054181.

Paralogs (same species)

Taxon name	Gene(s)	Expression comparison	See details
Clupeocephala	1 gene ENSDARG00000021150 valopa	Compare expression	[+]
Chordata	2 genes ENSDARG00000021150 valopa ENSDARG00000044672 parapinopsinb	Compare expression	[+]

Paralogy information comes from OMA : ENSDARG00000054181.

Cross-references

Ensembl	ENSDARG00000054181 (valopb)
ZFIN	ZDB-GENE-040724-41 (valopb)
EMBL	AL732488, AY996588
Uniprot/SPTREMBL	A8YXX6, A8YXX6_DANRE