D. rerio Gene: pgk1 - ENSDARG00000054191 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000054191
Namepgk1
Descriptionphosphoglycerate kinase 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2711]
OrganismDanio rerio (zebrafish)
Synonym(s)wu:fd59b07, wu:fj36g06, zgc:56252, zgc:77899

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
273
  • 273
99.09
  • 99.09
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
293
  • 293
99.02
  • 99.02
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
313
  • 313
98.96
  • 98.96
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
319
  • 319
98.93
  • 98.93
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
323
  • 323
  • 693
98.92
  • 98.92
  • 97.68
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000104life cycle
383
  • 383
  • 2.63e3
  • 1.33e4
98.72
  • 98.72
  • 91.20
  • 55.51
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
416
  • 416
98.61
  • 98.61
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
444
  • 444
  • 966
  • 1.04e3
  • 1.41e3
  • 2.42e3
  • 2.59e3
  • 3.05e3
  • 6.87e3
  • 9.52e3
  • 9.69e3
98.52
  • 98.52
  • 96.77
  • 96.53
  • 95.28
  • 91.89
  • 91.34
  • 89.78
  • 77.01
  • 68.14
  • 67.55
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
459
  • 459
98.47
  • 98.47
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
  • ZFS:0000035Larval:Protruding-mouth
460
  • 460
  • 552
  • 1.21e4
98.46
  • 98.46
  • 98.16
  • 59.59
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
468
  • 468
98.44
  • 98.44
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
517
  • 517
  • 1.47e4
98.27
  • 98.27
  • 50.63
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
525
  • 525
98.25
  • 98.25
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
537
  • 537
  • 724
  • 761
98.20
  • 98.20
  • 97.58
  • 97.45
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
550
  • 550
98.16
  • 98.16
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
577
  • 577
98.07
  • 98.07
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000106zygote stage
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
578
  • 578
  • 686
  • 734
  • 798
  • 948
  • 2.26e3
  • 2.91e3
  • 5.38e3
  • 9.30e3
  • 1.02e4
  • 1.03e4
  • 1.12e4
  • 1.12e4
  • 1.15e4
  • 1.16e4
  • 1.41e4
98.07
  • 98.07
  • 97.71
  • 97.55
  • 97.33
  • 96.83
  • 92.43
  • 90.26
  • 82.00
  • 68.85
  • 65.79
  • 65.62
  • 62.57
  • 62.57
  • 61.58
  • 61.16
  • 52.63
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
642
  • 642
97.85
  • 97.85
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000015Blastula:Dome
678
  • 678
  • 1.19e3
  • 5.07e3
  • 5.33e3
  • 6.27e3
97.73
  • 97.73
  • 96.02
  • 83.02
  • 82.15
  • 79.01
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
678
  • 678
97.73
  • 97.73
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
822
  • 822
97.25
  • 97.25
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
830
  • 830
97.22
  • 97.22
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
985
  • 985
  • 1.39e3
  • 4.84e3
  • 8.52e3
96.71
  • 96.71
  • 95.34
  • 83.78
  • 71.48
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.74e3
  • 1.74e3
94.17
  • 94.17
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
2.11e3
  • 2.11e3
92.95
  • 92.95
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.52e3
  • 2.52e3
91.55
  • 91.55
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
2.55e3
  • 2.55e3
  • 5.87e3
91.46
  • 91.46
  • 80.36
AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
3.36e3
  • 3.36e3
88.76
  • 88.76
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
3.77e3
  • 3.77e3
87.38
  • 87.38
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
6.92e3
  • 6.92e3
  • 9.11e3
  • 9.60e3
  • 1.13e4
  • 1.14e4
76.83
  • 76.83
  • 69.50
  • 67.86
  • 62.04
  • 61.79
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
7.23e3
  • 7.23e3
75.80
  • 75.80
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.00e4
  • 1.00e4
66.46
  • 66.46
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.39e4
  • 1.39e4
53.56
  • 53.56
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
1.46e4
  • 1.46e4
51.06
  • 51.06
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Cross-references

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