D. rerio Gene: mthfd2l - ENSDARG00000054199 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000054199
Namemthfd2l
Descriptionmethylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like [Source:ZFIN;Acc:ZDB-GENE-030131-5707]
OrganismDanio rerio (zebrafish)
Synonym(s)wu:fi14c12, zgc:63479
Orthologs(s)22 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0000066fully formed stage
4.88e3
  • 4.88e3
83.67
  • 83.67
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
7.36e3
  • 7.36e3
75.36
  • 75.36
AEIR
  • AEIR
UBERON:0003080anterior neural tube
  • ZFS:0000029Pharyngula:Prim-5
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
9.00e3
  • 9.00e3
69.87
  • 69.87
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.03e4
  • 1.03e4
65.48
  • 65.48
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.08e4
  • 1.08e4
63.88
  • 63.88
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
1.18e4
  • 1.18e4
  • 1.60e4
60.36
  • 60.36
  • 46.39
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.33e4
  • 1.33e4
55.57
  • 55.57
AEIR
  • AEIR
UBERON:0003072optic cup
  • ZFS:0000029Pharyngula:Prim-5
1.34e4
  • 1.34e4
54.99
  • 54.99
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.43e4
  • 1.43e4
52.10
  • 52.10
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.52e4
  • 1.52e4
  • 2.10e4
49.26
  • 49.26
  • 29.74
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.59e4
  • 1.59e4
46.75
  • 46.75
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
1.74e4
  • 1.74e4
  • 1.84e4
  • 1.93e4
  • 1.95e4
  • 1.95e4
41.77
  • 41.77
  • 38.52
  • 35.49
  • 34.74
  • 34.55
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.76e4
  • 1.76e4
  • 2.10e4
41.05
  • 41.05
  • 29.83
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.82e4
  • 1.82e4
39.20
  • 39.20
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.91e4
  • 1.91e4
35.97
  • 35.97
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.99e4
  • 1.99e4
33.43
  • 33.43
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
2.01e4
  • 2.01e4
32.77
  • 32.77
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi16 species16 genesCompare expression
Bilateria22 species22 genesCompare expression

Orthology information comes from OMA : ENSDARG00000054199.

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Deuterostomia1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000054199.

Cross-references

EnsemblENSDARG00000054199 (mthfd2l)
ZFINZDB-GENE-030131-5707 (mthfd2l)
EMBLBX545917
Uniprot/SPTREMBLE9QC23, E9QC23_DANRE, F1QXT9, F1QXT9_DANRE

Do not show this banner again