D. rerio Gene: rnf40 - ENSDARG00000054201 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000054201
Namernf40
Descriptionring finger protein 40 [Source:ZFIN;Acc:ZDB-GENE-030131-6607]
OrganismDanio rerio (zebrafish)
Synonym(s)si:rp71-1c10.1, wu:fk48a06, zgc:103763, zgc:152796

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.80e3
  • 1.80e3
93.99
  • 93.99
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0004707pharyngula stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
1.89e3
  • 1.89e3
  • 2.23e3
  • 2.50e3
  • 2.73e3
  • 2.77e3
  • 2.96e3
  • 3.17e3
  • 4.12e3
  • 4.28e3
  • 4.53e3
93.69
  • 93.69
  • 92.54
  • 91.62
  • 90.87
  • 90.72
  • 90.08
  • 89.38
  • 86.19
  • 85.67
  • 84.84
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
1.90e3
  • 1.90e3
  • 2.11e3
  • 2.11e3
  • 2.18e3
  • 2.40e3
  • 2.42e3
93.63
  • 93.63
  • 92.94
  • 92.94
  • 92.69
  • 91.95
  • 91.91
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • UBERON:0004707pharyngula stage
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000106zygote stage
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
1.94e3
  • 1.94e3
  • 2.02e3
  • 2.02e3
  • 2.03e3
  • 2.24e3
  • 2.25e3
  • 3.00e3
  • 3.10e3
  • 3.53e3
  • 4.97e3
  • 4.98e3
  • 5.03e3
  • 5.08e3
  • 5.55e3
  • 6.54e3
  • 6.64e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.97e3
  • 7.03e3
  • 7.47e3
  • 7.47e3
  • 7.91e3
  • 8.06e3
  • 8.96e3
  • 8.96e3
93.51
  • 93.51
  • 93.25
  • 93.23
  • 93.19
  • 92.52
  • 92.47
  • 89.94
  • 89.63
  • 88.19
  • 83.38
  • 83.33
  • 83.17
  • 82.98
  • 81.41
  • 78.12
  • 77.77
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 76.66
  • 76.46
  • 74.99
  • 74.99
  • 73.52
  • 73.02
  • 69.99
  • 69.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
2.09e3
  • 2.09e3
93.02
  • 93.02
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
2.19e3
  • 2.19e3
92.66
  • 92.66
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
2.27e3
  • 2.27e3
92.40
  • 92.40
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
2.45e3
  • 2.45e3
  • 3.42e3
  • 3.92e3
  • 6.82e3
  • 7.19e3
91.81
  • 91.81
  • 88.54
  • 86.88
  • 77.17
  • 75.94
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
2.54e3
  • 2.54e3
  • 2.60e3
  • 3.82e3
  • 6.29e3
91.49
  • 91.49
  • 91.28
  • 87.21
  • 78.94
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
2.63e3
  • 2.63e3
91.19
  • 91.19
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.92e3
  • 2.92e3
90.22
  • 90.22
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
2.98e3
  • 2.98e3
90.03
  • 90.03
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
3.19e3
  • 3.19e3
89.33
  • 89.33
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
3.53e3
  • 3.53e3
88.18
  • 88.18
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
3.57e3
  • 3.57e3
88.05
  • 88.05
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
3.80e3
  • 3.80e3
  • 5.16e3
87.26
  • 87.26
  • 82.73
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
3.85e3
  • 3.85e3
  • 4.55e3
87.12
  • 87.12
  • 84.76
AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
4.11e3
  • 4.11e3
  • 4.93e3
86.23
  • 86.23
  • 83.48
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
4.27e3
  • 4.27e3
85.72
  • 85.72
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
4.37e3
  • 4.37e3
85.38
  • 85.38
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
4.45e3
  • 4.45e3
  • 4.75e3
85.10
  • 85.10
  • 84.09
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
4.60e3
  • 4.60e3
84.61
  • 84.61
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
4.63e3
  • 4.63e3
84.50
  • 84.50
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
4.66e3
  • 4.66e3
  • 4.71e3
  • 5.43e3
84.40
  • 84.40
  • 84.24
  • 81.81
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
4.81e3
  • 4.81e3
83.89
  • 83.89
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
4.98e3
  • 4.98e3
83.34
  • 83.34
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
5.05e3
  • 5.05e3
83.10
  • 83.10
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
5.10e3
  • 5.10e3
82.92
  • 82.92
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
5.34e3
  • 5.34e3
82.12
  • 82.12
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
5.60e3
  • 5.60e3
81.27
  • 81.27
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
5.65e3
  • 5.65e3
81.10
  • 81.10
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
6.79e3
  • 6.79e3
77.28
  • 77.28
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.20e4
  • 1.20e4
59.91
  • 59.91
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

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