Gene: ap4s1 - ENSDARG00000054220 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000054220
Name	ap4s1
Description	adaptor-related protein complex 4, sigma 1 subunit [Source:ZFIN;Acc:ZDB-GENE-030616-404]
Organism	Danio rerio (zebrafish)
Synonym(s)	ap4, si:dz115o7.1, si:dz234g15.5, zgc:136677
Orthologs(s)	19 orthologs
Paralog(s)	6 paralogs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0000970	eye	[+] 1 stage ZFS:0000031Pharyngula:Prim-25	2.62e3 2.62e3	91.24 91.24	AEIR AEIR
UBERON:0000922	embryo	[+] 5 stages ZFS:0000029Pharyngula:Prim-5 UBERON:0004707pharyngula stage UBERON:0000068embryo stage ZFS:0000037Larval:Day 5 ZFS:0000033Hatching:Long-pec	2.98e3 2.98e3 4.21e3 4.91e3 5.99e3 6.43e3	90.02 90.02 85.92 83.57 79.95 78.48	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0002107	liver	[+] 1 stage UBERON:0000066fully formed stage	3.66e3 3.66e3	87.74 87.74	AEIR AEIR
UBERON:0002548	larva	[+] 2 stages UBERON:0000069larval stage ZFS:0000037Larval:Day 5	4.01e3 4.01e3 4.02e3	86.58 86.58 86.53	AEIR AEIR AEIR
UBERON:0000033	head	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000066fully formed stage	5.03e3 5.03e3 9.13e3	83.16 83.16 69.43	AEIR AEIR AEIR
UBERON:0000948	heart	[+] 2 stages ZFS:0000036Larval:Day 4 UBERON:0000066fully formed stage	5.20e3 5.20e3 5.61e3	82.59 82.59 81.22	AEIR AEIR AEIR
UBERON:0004734	gastrula	[+] 2 stages ZFS:0000022Gastrula:Bud ZFS:0000019Gastrula:Shield	5.20e3 5.20e3 9.46e3	82.58 82.58 68.33	AEIR AEIR AEIR
UBERON:0001630	muscle organ	[+] 1 stage UBERON:0000066fully formed stage	6.13e3 6.13e3	79.48 79.48	AEIR AEIR
CL:0000094	granulocyte	[+] 1 stage UBERON:0000066fully formed stage	6.26e3 6.26e3	79.03 79.03	AEIR AEIR
UBERON:0000160	intestine	[+] 1 stage UBERON:0000066fully formed stage	6.43e3 6.43e3	78.46 78.46	AEIR AEIR
UBERON:0002385	muscle tissue	[+] 1 stage UBERON:0000066fully formed stage	6.46e3 6.46e3	78.38 78.38	AEIR AEIR
UBERON:0002415	tail	[+] 1 stage UBERON:0000066fully formed stage	6.47e3 6.47e3	78.34 78.34	AEIR AEIR
UBERON:0000955	brain	[+] 1 stage UBERON:0000066fully formed stage	7.05e3 7.05e3	76.38 76.38	AEIR AEIR
UBERON:0000992	female gonad	[+] 1 stage UBERON:0000066fully formed stage	7.66e3 7.66e3	74.36 74.36	AEIR AEIR
UBERON:0002106	spleen	[+] 1 stage UBERON:0000066fully formed stage	7.74e3 7.74e3	74.08 74.08	AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	7.83e3 7.83e3	73.77 73.77	AEIR AEIR
UBERON:0002113	kidney	[+] 1 stage UBERON:0000066fully formed stage	8.33e3 8.33e3	72.12 72.12	AEIR AEIR
UBERON:0006860	swim bladder	[+] 1 stage UBERON:0000066fully formed stage	8.38e3 8.38e3	71.94 71.94	AEIR AEIR
UBERON:0007132	head kidney	[+] 1 stage UBERON:0000066fully formed stage	8.59e3 8.59e3	71.22 71.22	AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	8.80e3 8.80e3	70.53 70.53	AEIR AEIR
UBERON:0000206	pharyngeal gill	[+] 1 stage UBERON:0000066fully formed stage	9.65e3 9.65e3	67.69 67.69	AEIR AEIR
UBERON:0000473	testis	[+] 1 stage UBERON:0000066fully formed stage	1.04e4 1.04e4	65.16 65.16	AEIR AEIR
UBERON:0000966	retina	[+] 1 stage ZFS:0000037Larval:Day 5	1.05e4 1.05e4	64.75 64.75	AEIR AEIR
UBERON:0000307	blastula	[+] 2 stages ZFS:0000015Blastula:Dome ZFS:0000011Blastula:1k-cell	1.10e4 1.10e4 1.25e4	63.17 63.17 58.05	AEIR AEIR AEIR
UBERON:0003982	mature ovarian follicle	[+] 1 stage UBERON:0000066fully formed stage	1.33e4 1.33e4	55.46 55.46	AEIR AEIR
UBERON:0019248	early embryo	[+] 1 stage UBERON:0000107cleavage stage	1.37e4 1.37e4	54.10 54.10	AEIR AEIR
UBERON:0000019	camera-type eye	[+] 1 stage UBERON:0000066fully formed stage	1.50e4 1.50e4	49.94 49.94	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

EST data: Bgee
RNA-Seq data: Bgee

Sources of raw data:

EST data: UniGene
RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Euteleostomi	17 species Homo sapiens (human) Mus musculus (mouse) Pan troglodytes (chimpanzee) Gorilla gorilla (gorilla) Macaca mulatta (macaque) Rattus norvegicus (rat) Bos taurus (cattle) Sus scrofa (pig) Equus caballus (horse) Oryctolagus cuniculus (rabbit) Felis catus (cat) Cavia porcellus (guinea pig) Erinaceus europaeus (hedgehog) Ornithorhynchus anatinus (platypus) Gallus gallus (chicken) Anolis carolinensis (green anole) Xenopus tropicalis (western clawed frog)	19 genes ENSG00000100478 AP4S1 ENSMUSG00000020955 Ap4s1 ENSPTRG00000006239 AP4S1 ENSGGOG00000003198 AP4S1 ENSMMUG00000003123 AP4S1 ENSMMUG00000029539 ENSRNOG00000005765 Ap4s1 ENSBTAG00000017201 AP4S1 ENSSSCG00000001972 AP4S1 ENSECAG00000021753 AP4S1 ENSOCUG00000011430 AP4S1 ENSFCAG00000005738 ENSFCAG00000025177 ENSCPOG00000005118 AP4S1 ENSEEUG00000013009 AP4S1 ENSOANG00000014031 AP4S1 ENSGALG00000009936 AP4S1 ENSACAG00000015092 AP4S1 ENSXETG00000014154 ap4s1	Compare expression	[+]

Orthology information comes from OMA : ENSDARG00000054220.

Paralogs (same species)

Taxon name	Gene(s)	Expression comparison	See details
Opisthokonta	1 gene ENSDARG00000026967 ap2s1	Compare expression	[+]
Eukaryota	6 genes ENSDARG00000026967 ap2s1 ENSDARG00000027966 ap1s3b ENSDARG00000039882 ap3s2 ENSDARG00000056803 ap1s1 ENSDARG00000058504 ap1s2 ENSDARG00000076073 ap1s3a	Compare expression	[+]

Paralogy information comes from OMA : ENSDARG00000054220.

Cross-references

Ensembl	ENSDARG00000054220 (ap4s1)
ZFIN	ZDB-GENE-030616-404 (ap4s1)
EMBL	BC114244, BX324186
Uniprot/SPTREMBL	E9QFP9, E9QFP9_DANRE, F1QMZ2, F1QMZ2_DANRE, K9J6Q2, K9J6Q2_DANRE, Q29RE3, Q29RE3_DANRE