D. rerio Gene: sobpa - ENSDARG00000054253 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000054253
Namesobpa
Descriptionsine oculis binding protein homolog (Drosophila) a [Source:ZFIN;Acc:ZDB-GENE-090313-313]
OrganismDanio rerio (zebrafish)
Synonym(s)jxc1a, si:dkey-47e6.1

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
5.60e3
  • 5.60e3
81.24
  • 81.24
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
7.14e3
  • 7.14e3
76.11
  • 76.11
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
8.97e3
  • 8.97e3
  • 1.47e4
  • 1.56e4
  • 1.91e4
  • 2.21e4
69.98
  • 69.98
  • 50.90
  • 47.88
  • 35.94
  • 26.16
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.22e4
  • 1.22e4
59.15
  • 59.15
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.26e4
  • 1.26e4
  • 1.55e4
57.78
  • 57.78
  • 48.19
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.43e4
  • 1.43e4
52.18
  • 52.18
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.53e4
  • 1.53e4
  • 1.73e4
48.87
  • 48.87
  • 42.17
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.76e4
  • 1.76e4
40.97
  • 40.97
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.78e4
  • 1.78e4
40.44
  • 40.44
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.87e4
  • 1.87e4
  • 1.94e4
37.26
  • 37.26
  • 35.01
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.92e4
  • 1.92e4
35.65
  • 35.65
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.93e4
  • 1.93e4
35.51
  • 35.51
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.07e4
  • 2.07e4
30.53
  • 30.53
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Cross-references

EMBLCU019663
EnsemblENSDARG00000054253 (sobpa)
Uniprot/SPTREMBLB8JKJ8, B8JKJ8_DANRE
ZFINZDB-GENE-090313-313 (sobpa)

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