D. rerio Gene: pparab - ENSDARG00000054323 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000054323
Namepparab
Descriptionperoxisome proliferator-activated receptor alpha b [Source:ZFIN;Acc:ZDB-GENE-990415-211]
OrganismDanio rerio (zebrafish)
Synonym(s)nr1c1b, ppar[a], ppara, ppara1, pparal
Orthologs(s)18 orthologs
Paralog(s)4 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000468multi-cellular organism
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000033Hatching:Long-pec
2.42e3
  • 2.42e3
  • 5.77e3
  • 1.17e4
91.91
  • 91.91
  • 80.67
  • 60.70
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
5.64e3
  • 5.64e3
81.10
  • 81.10
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
5.92e3
  • 5.92e3
80.16
  • 80.16
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
7.45e3
  • 7.45e3
  • 1.55e4
75.07
  • 75.07
  • 48.01
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
7.48e3
  • 7.48e3
74.96
  • 74.96
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
9.63e3
  • 9.63e3
67.75
  • 67.75
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.11e4
  • 1.11e4
62.69
  • 62.69
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
1.14e4
  • 1.14e4
  • 1.14e4
61.91
  • 61.91
  • 61.79
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.17e4
  • 1.17e4
60.88
  • 60.88
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.30e4
  • 1.30e4
56.35
  • 56.35
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.32e4
  • 1.32e4
55.81
  • 55.81
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
1.35e4
  • 1.35e4
54.70
  • 54.70
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.53e4
  • 1.53e4
48.89
  • 48.89
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.53e4
  • 1.53e4
  • 1.85e4
48.68
  • 48.68
  • 38.04
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
1.56e4
  • 1.56e4
  • 1.85e4
  • 1.87e4
  • 1.91e4
  • 2.04e4
47.61
  • 47.61
  • 38.21
  • 37.22
  • 36.13
  • 31.57
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.58e4
  • 1.58e4
47.02
  • 47.02
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.64e4
  • 1.64e4
45.13
  • 45.13
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.67e4
  • 1.67e4
44.20
  • 44.20
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.70e4
  • 1.70e4
43.20
  • 43.20
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.72e4
  • 1.72e4
42.53
  • 42.53
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.94e4
  • 1.94e4
  • 2.06e4
35.18
  • 35.18
  • 31.15
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.03e4
  • 2.03e4
32.05
  • 32.05
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.13e4
  • 2.13e4
28.75
  • 28.75
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata4 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000054323.

Cross-references

EnsemblENSDARG00000054323 (pparab)
ZFINZDB-GENE-990415-211 (pparab)
EMBLCR354430
Uniprot/SPTREMBLK7DY57, K7DY57_DANRE

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