D. rerio Gene: rpe65c - ENSDARG00000054420 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000054420
Namerpe65c
Descriptionretinal pigment epithelium-specific protein 65c [Source:ZFIN;Acc:ZDB-GENE-081104-505]
OrganismDanio rerio (zebrafish)
Synonym(s)e7fbt0, rpe56c, si:ch211-198n5.12
Paralog(s)7 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
8.88e3
  • 8.88e3
70.26
  • 70.26
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.09e4
  • 1.09e4
63.36
  • 63.36
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
1.13e4
  • 1.13e4
  • 1.17e4
  • 1.19e4
  • 1.22e4
  • 1.45e4
62.26
  • 62.26
  • 60.97
  • 60.03
  • 59.02
  • 51.45
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.22e4
  • 1.22e4
59.30
  • 59.30
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
1.31e4
  • 1.31e4
  • 1.59e4
56.23
  • 56.23
  • 46.71
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.31e4
  • 1.31e4
  • 1.77e4
56.12
  • 56.12
  • 40.63
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.34e4
  • 1.34e4
  • 1.56e4
55.11
  • 55.11
  • 47.62
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
1.45e4
  • 1.45e4
51.35
  • 51.35
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.83e4
  • 1.83e4
38.83
  • 38.83
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.94e4
  • 1.94e4
35.02
  • 35.02
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.16e4
  • 2.16e4
27.78
  • 27.78
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.22e4
  • 2.22e4
25.57
  • 25.57
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Otophysi1 geneCompare expression
Vertebrata2 genesCompare expression
Opisthokonta7 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000054420.

Cross-references

EnsemblENSDARG00000054420 (rpe65c)
ZFINZDB-GENE-081104-505 (rpe65c)
EMBLCR759968
Uniprot/SWISSPROTA9C3R8, RP65C_DANRE

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