D. rerio Gene: slc29a1b - ENSDARG00000054447 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000054447
Nameslc29a1b
Descriptionsolute carrier family 29 (equilibrative nucleoside transporter), member 1b [Source:ZFIN;Acc:ZDB-GENE-130415-4]
OrganismDanio rerio (zebrafish)
Orthologs(s)16 orthologs
Paralog(s)6 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.92e3
  • 1.92e3
93.56
  • 93.56
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
2.78e3
  • 2.78e3
90.69
  • 90.69
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
3.30e3
  • 3.30e3
  • 7.32e3
88.94
  • 88.94
  • 75.49
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
5.12e3
  • 5.12e3
82.85
  • 82.85
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
6.29e3
  • 6.29e3
78.94
  • 78.94
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
6.96e3
  • 6.96e3
76.68
  • 76.68
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
7.86e3
  • 7.86e3
73.70
  • 73.70
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
8.32e3
  • 8.32e3
  • 9.49e3
  • 1.14e4
  • 1.28e4
  • 1.42e4
72.14
  • 72.14
  • 68.22
  • 61.81
  • 57.24
  • 52.38
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
8.78e3
  • 8.78e3
  • 1.27e4
70.61
  • 70.61
  • 57.45
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.09e4
  • 1.09e4
63.43
  • 63.43
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.14e4
  • 1.14e4
61.88
  • 61.88
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.20e4
  • 1.20e4
59.68
  • 59.68
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.22e4
  • 1.22e4
59.08
  • 59.08
AEIR
  • AEIR
CL:0000081blood cell
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0004852cardiovascular system endothelium
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.52e4
  • 1.52e4
49.19
  • 49.19
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.53e4
  • 1.53e4
48.61
  • 48.61
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.60e4
  • 1.60e4
  • 1.84e4
46.44
  • 46.44
  • 38.44
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.63e4
  • 1.63e4
45.42
  • 45.42
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.68e4
  • 1.68e4
43.67
  • 43.67
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Euteleostomi1 geneCompare expression
Bilateria3 genesCompare expression
Eumetazoa4 genesCompare expression
Eukaryota6 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000054447.

Cross-references

EnsemblENSDARG00000054447 (slc29a1b)
ZFINZDB-GENE-130415-4 (slc29a1b)
Uniprot/SPTREMBLF1QIW3, F1QIW3_DANRE

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