D. rerio Gene: nhsl1a - ENSDARG00000054537 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000054537
Namenhsl1a
DescriptionNHS-like 1a [Source:ZFIN;Acc:ZDB-GENE-050411-25]
OrganismDanio rerio (zebrafish)
Synonym(s)im:7139028

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
655
  • 655
  • 1.15e4
  • 1.20e4
97.81
  • 97.81
  • 61.34
  • 59.98
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.30e3
  • 1.30e3
  • 5.43e3
95.66
  • 95.66
  • 81.81
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
3.78e3
  • 3.78e3
  • 4.56e3
87.35
  • 87.35
  • 84.72
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
4.44e3
  • 4.44e3
  • 7.77e3
  • 1.09e4
  • 1.26e4
  • 1.50e4
85.13
  • 85.13
  • 73.99
  • 63.41
  • 57.97
  • 49.87
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
5.82e3
  • 5.82e3
  • 1.02e4
80.52
  • 80.52
  • 65.78
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
6.79e3
  • 6.79e3
77.27
  • 77.27
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
8.39e3
  • 8.39e3
71.90
  • 71.90
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
8.78e3
  • 8.78e3
70.61
  • 70.61
AEIR
  • AEIR
UBERON:0001792ganglionic layer of retina
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
8.96e3
  • 8.96e3
  • 1.12e4
69.99
  • 69.99
  • 62.49
AEIR
  • AEIR
  • AEIR
UBERON:0005426lens vesicle
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
8.96e3
  • 8.96e3
  • 9.67e3
  • 1.03e4
69.98
  • 69.98
  • 67.63
  • 65.61
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001714cranial ganglion
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
9.34e3
  • 9.34e3
  • 9.96e3
  • 9.96e3
  • 1.12e4
  • 1.17e4
  • 1.17e4
  • 1.17e4
  • 1.37e4
68.74
  • 68.74
  • 66.65
  • 66.65
  • 62.49
  • 60.70
  • 60.70
  • 60.70
  • 54.15
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
9.91e3
  • 9.91e3
66.80
  • 66.80
AEIR
  • AEIR
UBERON:0001017central nervous system
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000029Pharyngula:Prim-5
9.96e3
  • 9.96e3
  • 1.34e4
66.67
  • 66.67
  • 55.24
AEIR
  • AEIR
  • AEIR
UBERON:0003053ventricular zone
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.12e4
  • 1.12e4
  • 1.12e4
62.49
  • 62.49
  • 62.49
AEIR
  • AEIR
  • AEIR
UBERON:0001890forebrain
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
1.15e4
  • 1.15e4
  • 1.26e4
61.53
  • 61.53
  • 57.68
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.18e4
  • 1.18e4
60.57
  • 60.57
AEIR
  • AEIR
UBERON:0000965lens of camera-type eye
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.18e4
  • 1.18e4
  • 1.20e4
60.50
  • 60.50
  • 59.98
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.19e4
  • 1.19e4
60.05
  • 60.05
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.21e4
  • 1.21e4
59.52
  • 59.52
AEIR
  • AEIR
UBERON:0005519rhombomere 6
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000029Pharyngula:Prim-5
1.24e4
  • 1.24e4
  • 1.49e4
58.33
  • 58.33
  • 49.99
AEIR
  • AEIR
  • AEIR
UBERON:0005515rhombomere 5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000029Pharyngula:Prim-5
1.28e4
  • 1.28e4
  • 1.49e4
57.14
  • 57.14
  • 49.99
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.34e4
  • 1.34e4
55.21
  • 55.21
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.36e4
  • 1.36e4
54.49
  • 54.49
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.38e4
  • 1.38e4
53.96
  • 53.96
AEIR
  • AEIR
UBERON:0001892rhombomere
  • ZFS:0000026Segmentation:14-19 somites
1.39e4
  • 1.39e4
53.55
  • 53.55
AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000026Segmentation:14-19 somites
1.42e4
  • 1.42e4
52.47
  • 52.47
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.42e4
  • 1.42e4
52.37
  • 52.37
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.46e4
  • 1.46e4
51.16
  • 51.16
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.51e4
  • 1.51e4
49.44
  • 49.44
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.60e4
  • 1.60e4
46.53
  • 46.53
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.66e4
  • 1.66e4
44.27
  • 44.27
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.68e4
  • 1.68e4
43.61
  • 43.61
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

Do not show this banner again