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D. rerio Gene: samsn1a - ENSDARG00000054543 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000054543
Namesamsn1a
DescriptionSAM domain, SH3 domain and nuclear localisation signals 1a [Source:ZFIN;Acc:ZDB-GENE-030131-8639]
OrganismDanio rerio (zebrafish)
Synonym(s)samsn1, wu:fa92h05, wu:fq83f12
Orthologs(s)17 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.49e3
  • 1.49e3
95.00
  • 95.00
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
1.56e3
  • 1.56e3
  • 4.85e3
  • 1.06e4
  • 1.48e4
94.80
  • 94.80
  • 83.76
  • 64.38
  • 50.57
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.77e3
  • 1.77e3
94.09
  • 94.09
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.83e3
  • 2.83e3
90.52
  • 90.52
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000068embryo stage
4.06e3
  • 4.06e3
  • 1.01e4
  • 1.49e4
  • 1.62e4
  • 1.62e4
  • 1.78e4
  • 1.81e4
86.41
  • 86.41
  • 66.31
  • 49.98
  • 45.87
  • 45.75
  • 40.27
  • 39.52
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
4.99e3
  • 4.99e3
83.30
  • 83.30
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000036Larval:Day 4
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
6.89e3
  • 6.89e3
  • 1.16e4
  • 1.30e4
  • 1.36e4
  • 1.69e4
  • 1.78e4
  • 1.79e4
  • 1.80e4
76.93
  • 76.93
  • 61.32
  • 56.31
  • 54.59
  • 43.53
  • 40.38
  • 40.18
  • 39.85
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
8.51e3
  • 8.51e3
  • 1.08e4
  • 1.28e4
71.52
  • 71.52
  • 63.93
  • 57.10
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
9.60e3
  • 9.60e3
67.84
  • 67.84
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
9.73e3
  • 9.73e3
67.42
  • 67.42
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.00e4
  • 1.00e4
  • 1.32e4
66.51
  • 66.51
  • 55.66
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.02e4
  • 1.02e4
65.97
  • 65.97
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.04e4
  • 1.04e4
65.33
  • 65.33
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
1.05e4
  • 1.05e4
  • 1.31e4
64.84
  • 64.84
  • 56.30
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.06e4
  • 1.06e4
64.42
  • 64.42
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.13e4
  • 1.13e4
62.30
  • 62.30
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
1.20e4
  • 1.20e4
  • 1.42e4
59.82
  • 59.82
  • 52.42
AEIR
  • AEIR
  • AEIR
UBERON:0000178blood
  • ZFS:0000029Pharyngula:Prim-5
1.31e4
  • 1.31e4
56.23
  • 56.23
AEIR
  • AEIR
UBERON:0005426lens vesicle
  • ZFS:0000029Pharyngula:Prim-5
1.34e4
  • 1.34e4
54.97
  • 54.97
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.35e4
  • 1.35e4
54.81
  • 54.81
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.40e4
  • 1.40e4
53.23
  • 53.23
AEIR
  • AEIR
CL:0000235macrophage
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Euteleostomi1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000054543.

Cross-references

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