D. rerio Gene: col10a1a - ENSDARG00000054753 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000054753
Namecol10a1a
Descriptioncollagen, type X, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-8373]
OrganismDanio rerio (zebrafish)
Synonym(s)col10a1, fa66d11, wu:fa66d11, wu:fb10c08
Orthologs(s)18 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000468multi-cellular organism
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
540
  • 540
  • 1.51e3
  • 7.91e3
  • 9.19e3
  • 1.38e4
  • 1.40e4
  • 1.78e4
  • 1.78e4
98.20
  • 98.20
  • 94.94
  • 73.50
  • 69.24
  • 53.74
  • 53.03
  • 40.56
  • 40.43
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
651
  • 651
  • 914
  • 3.56e3
97.82
  • 97.82
  • 96.94
  • 88.08
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.02e3
  • 1.02e3
  • 1.38e4
96.59
  • 96.59
  • 53.87
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.18e3
  • 1.18e3
96.07
  • 96.07
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
1.28e3
  • 1.28e3
95.72
  • 95.72
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.75e3
  • 1.75e3
94.14
  • 94.14
AEIR
  • AEIR
UBERON:2000250opercle
  • ZFS:0000036Larval:Day 4
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000038Larval:Day 6
2.99e3
  • 2.99e3
  • 3.73e3
  • 7.47e3
  • 1.12e4
  • 1.49e4
90.00
  • 90.00
  • 87.50
  • 75.00
  • 62.50
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
3.12e3
  • 3.12e3
89.55
  • 89.55
AEIR
  • AEIR
UBERON:0002397maxilla
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
3.73e3
  • 3.73e3
  • 7.47e3
  • 1.49e4
87.50
  • 87.50
  • 75.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004741cleithrum
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000034Hatching:Pec-fin
3.73e3
  • 3.73e3
  • 3.73e3
  • 4.98e3
  • 7.47e3
  • 1.49e4
87.50
  • 87.50
  • 87.50
  • 83.33
  • 75.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004745parasphenoid
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • ZFS:0000038Larval:Day 6
  • ZFS:0000034Hatching:Pec-fin
3.73e3
  • 3.73e3
  • 4.98e3
  • 7.47e3
  • 1.49e4
  • 1.49e4
87.50
  • 87.50
  • 83.34
  • 75.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0011610ceratohyal cartilage
  • ZFS:0000038Larval:Day 6
  • ZFS:0000037Larval:Day 5
3.73e3
  • 3.73e3
  • 7.47e3
87.50
  • 87.50
  • 75.00
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
4.14e3
  • 4.14e3
  • 6.23e3
  • 1.78e4
86.15
  • 86.15
  • 79.15
  • 40.46
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004752palatoquadrate cartilage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000042Juvenile:Days 30-44
4.98e3
  • 4.98e3
  • 1.49e4
83.34
  • 83.34
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0011606hyomandibular bone
  • ZFS:0000037Larval:Day 5
4.98e3
  • 4.98e3
83.34
  • 83.34
AEIR
  • AEIR
UBERON:0011611ceratohyal bone
  • ZFS:0000037Larval:Day 5
  • ZFS:0000038Larval:Day 6
4.98e3
  • 4.98e3
  • 7.47e3
83.34
  • 83.34
  • 75.00
AEIR
  • AEIR
  • AEIR
UBERON:2000476branchiostegal ray
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
4.98e3
  • 4.98e3
  • 7.47e3
83.34
  • 83.34
  • 75.00
AEIR
  • AEIR
  • AEIR
UBERON:2000657entopterygoid
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
4.98e3
  • 4.98e3
  • 7.47e3
83.34
  • 83.34
  • 75.00
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
6.54e3
  • 6.54e3
78.12
  • 78.12
AEIR
  • AEIR
CL:0000062osteoblast
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000036Larval:Day 4
7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
75.00
  • 75.00
  • 75.00
  • 75.00
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000134mesenchymal cell
  • ZFS:0000042Juvenile:Days 30-44
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0004742dentary
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000038Larval:Day 6
  • ZFS:0000035Larval:Protruding-mouth
7.47e3
  • 7.47e3
  • 9.96e3
  • 1.49e4
  • 1.49e4
75.00
  • 75.00
  • 66.67
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002412vertebra
  • ZFS:0000038Larval:Day 6
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
7.47e3
  • 7.47e3
  • 1.49e4
  • 1.49e4
75.00
  • 75.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003107Meckel's cartilage
  • ZFS:0000036Larval:Day 4
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:2000694ceratobranchial 5 tooth
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
7.47e3
  • 7.47e3
  • 7.47e3
75.00
  • 75.00
  • 75.00
AEIR
  • AEIR
  • AEIR
UBERON:2001280branchiostegal ray 3
  • ZFS:0000036Larval:Day 4
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
7.47e3
  • 7.47e3
  • 1.12e4
  • 1.49e4
75.00
  • 75.00
  • 62.50
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2001922inter-frontal joint
  • ZFS:0000042Juvenile:Days 30-44
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
7.55e3
  • 7.55e3
74.73
  • 74.73
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
9.62e3
  • 9.62e3
67.78
  • 67.78
AEIR
  • AEIR
CL:0000138chondrocyte
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000038Larval:Day 6
  • ZFS:0000036Larval:Day 4
9.96e3
  • 9.96e3
  • 1.49e4
  • 1.49e4
66.67
  • 66.67
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0016631actinopterygian frontal-parietal joint
  • ZFS:0000043Juvenile:Days 45-89
9.96e3
  • 9.96e3
66.67
  • 66.67
AEIR
  • AEIR
UBERON:0011242ethmoid cartilage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
1.12e4
  • 1.12e4
  • 1.49e4
  • 1.49e4
62.50
  • 62.50
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.21e4
  • 1.21e4
  • 1.28e4
  • 2.06e4
59.59
  • 59.59
  • 57.13
  • 31.19
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000151pectoral fin
  • ZFS:0000031Pharyngula:Prim-25
1.28e4
  • 1.28e4
57.13
  • 57.13
AEIR
  • AEIR
UBERON:0004734gastrula
  • UBERON:0000109gastrula stage
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
1.32e4
  • 1.32e4
  • 1.58e4
  • 1.72e4
55.67
  • 55.67
  • 47.20
  • 42.33
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • UBERON:0000066fully formed stage
1.46e4
  • 1.46e4
51.26
  • 51.26
AEIR
  • AEIR
CL:0000743hypertrophic chondrocyte
  • ZFS:0000036Larval:Day 4
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
CL:0007010preosteoblast
  • ZFS:0000042Juvenile:Days 30-44
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0003113dermatocranium
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000036Larval:Day 4
1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0011634ectopterygoid bone
  • ZFS:0000036Larval:Day 4
  • ZFS:0000038Larval:Day 6
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0009635parachordal cartilage
  • ZFS:0000036Larval:Day 4
  • ZFS:0000038Larval:Day 6
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0010323cranial skeletal system
  • ZFS:0000041Larval:Days 21-29
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2001269regenerating fin/limb
  • ZFS:0000036Larval:Day 4
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.58e4
  • 1.58e4
  • 1.71e4
47.07
  • 47.07
  • 42.73
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
2.11e4
  • 2.11e4
29.51
  • 29.51
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Euteleostomi1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000054753.

Cross-references

EnsemblENSDARG00000054753 (col10a1a)
ZFINZDB-GENE-030131-8373 (col10a1a)
EMBLCU306817
Uniprot/SPTREMBLF1QXD5, F1QXD5_DANRE

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