D. rerio Gene: col10a1a - ENSDARG00000054753 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000054753
Namecol10a1a
Descriptioncollagen, type X, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-8373]
OrganismDanio rerio (zebrafish)
Synonym(s)col10a1, fa66d11, wu:fa66d11, wu:fb10c08

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreSources
UBERON:0000468multi-cellular organism
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000020Gastrula:75%-epiboly
536
  • 536
  • 1.50e3
  • 7.86e3
  • 9.12e3
  • 1.37e4
  • 1.39e4
  • 1.77e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
732
  • 732
  • 738
  • 908
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.01e3
  • 1.01e3
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.02e3
  • 1.02e3
  • 1.38e4
AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
1.27e3
  • 1.27e3
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.75e3
  • 1.75e3
AEIR
  • AEIR
UBERON:2000250opercle
  • ZFS:0000036Larval:Day 4
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000038Larval:Day 6
2.96e3
  • 2.96e3
  • 3.70e3
  • 7.40e3
  • 1.11e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
3.12e3
  • 3.12e3
AEIR
  • AEIR
UBERON:0002397maxilla
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
3.70e3
  • 3.70e3
  • 7.40e3
  • 1.48e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004741cleithrum
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000034Hatching:Pec-fin
3.70e3
  • 3.70e3
  • 3.70e3
  • 4.93e3
  • 7.40e3
  • 1.48e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004745parasphenoid
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • ZFS:0000038Larval:Day 6
  • ZFS:0000034Hatching:Pec-fin
3.70e3
  • 3.70e3
  • 4.93e3
  • 7.40e3
  • 1.48e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0011610ceratohyal cartilage
  • ZFS:0000038Larval:Day 6
  • ZFS:0000037Larval:Day 5
3.70e3
  • 3.70e3
  • 7.40e3
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
4.13e3
  • 4.13e3
  • 6.23e3
  • 1.78e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004752palatoquadrate cartilage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000042Juvenile:Days 30-44
4.93e3
  • 4.93e3
  • 1.48e4
AEIR
  • AEIR
  • AEIR
UBERON:0011606hyomandibular bone
  • ZFS:0000037Larval:Day 5
4.93e3
  • 4.93e3
AEIR
  • AEIR
UBERON:0011611ceratohyal bone
  • ZFS:0000037Larval:Day 5
  • ZFS:0000038Larval:Day 6
4.93e3
  • 4.93e3
  • 7.40e3
AEIR
  • AEIR
  • AEIR
UBERON:2000476branchiostegal ray
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
4.93e3
  • 4.93e3
  • 7.40e3
AEIR
  • AEIR
  • AEIR
UBERON:2000657entopterygoid
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
4.93e3
  • 4.93e3
  • 7.40e3
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
6.54e3
  • 6.54e3
AEIR
  • AEIR
CL:0000062osteoblast
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000036Larval:Day 4
7.40e3
  • 7.40e3
  • 7.40e3
  • 7.40e3
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000134mesenchymal cell
  • ZFS:0000042Juvenile:Days 30-44
7.40e3
  • 7.40e3
AEIR
  • AEIR
UBERON:0004742dentary
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000038Larval:Day 6
  • ZFS:0000035Larval:Protruding-mouth
7.40e3
  • 7.40e3
  • 9.86e3
  • 1.48e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002412vertebra
  • ZFS:0000038Larval:Day 6
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
7.40e3
  • 7.40e3
  • 1.48e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003107Meckel's cartilage
  • ZFS:0000036Larval:Day 4
7.40e3
  • 7.40e3
AEIR
  • AEIR
UBERON:2000694ceratobranchial 5 tooth
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
7.40e3
  • 7.40e3
  • 7.40e3
AEIR
  • AEIR
  • AEIR
UBERON:2001280branchiostegal ray 3
  • ZFS:0000036Larval:Day 4
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
7.40e3
  • 7.40e3
  • 1.11e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2001922inter-frontal joint
  • ZFS:0000042Juvenile:Days 30-44
7.40e3
  • 7.40e3
AEIR
  • AEIR
CL:0000138chondrocyte
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000038Larval:Day 6
  • ZFS:0000036Larval:Day 4
9.86e3
  • 9.86e3
  • 1.48e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0016631actinopterygian frontal-parietal joint
  • ZFS:0000043Juvenile:Days 45-89
9.86e3
  • 9.86e3
AEIR
  • AEIR
UBERON:0011242ethmoid cartilage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
1.11e4
  • 1.11e4
  • 1.48e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
1.20e4
  • 1.20e4
  • 1.90e4
AEIR
  • AEIR
  • AEIR
UBERON:0000151pectoral fin
  • ZFS:0000031Pharyngula:Prim-25
1.27e4
  • 1.27e4
AEIR
  • AEIR
UBERON:0004734gastrula
  • UBERON:0000109gastrula stage
  • ZFS:0000020Gastrula:75%-epiboly
1.31e4
  • 1.31e4
  • 1.71e4
AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • UBERON:0000066fully formed stage
1.44e4
  • 1.44e4
AEIR
  • AEIR
CL:0000743hypertrophic chondrocyte
  • ZFS:0000036Larval:Day 4
1.48e4
  • 1.48e4
AEIR
  • AEIR
CL:0007010preosteoblast
  • ZFS:0000042Juvenile:Days 30-44
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:0003113dermatocranium
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000036Larval:Day 4
1.48e4
  • 1.48e4
  • 1.48e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0011634ectopterygoid bone
  • ZFS:0000036Larval:Day 4
  • ZFS:0000038Larval:Day 6
1.48e4
  • 1.48e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
UBERON:0009635parachordal cartilage
  • ZFS:0000036Larval:Day 4
  • ZFS:0000038Larval:Day 6
1.48e4
  • 1.48e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
UBERON:0010323cranial skeletal system
  • ZFS:0000041Larval:Days 21-29
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:2001269regenerating fin/limb
  • ZFS:0000036Larval:Day 4
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
1.49e4
  • 1.49e4
  • 1.57e4
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.86e4
  • 1.86e4
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation
Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.
Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLCU306817
EnsemblENSDARG00000054753 (col10a1a)
Uniprot/SPTREMBLF1QXD5, F1QXD5_DANRE
ZFINZDB-GENE-030131-8373 (col10a1a)

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