D. rerio Gene: lysmd1 - ENSDARG00000054789 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000054789
Namelysmd1
DescriptionLysM, putative peptidoglycan-binding, domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-060929-1094]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:153301

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000015Blastula:Dome
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000016Blastula:30%-epiboly
2.66e3
  • 2.66e3
  • 5.02e3
  • 5.16e3
  • 5.46e3
  • 9.96e3
91.08
  • 91.08
  • 83.19
  • 82.73
  • 81.73
  • 66.64
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
3.02e3
  • 3.02e3
89.90
  • 89.90
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
4.43e3
  • 4.43e3
  • 1.44e4
85.17
  • 85.17
  • 51.84
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
4.50e3
  • 4.50e3
84.94
  • 84.94
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
4.61e3
  • 4.61e3
84.57
  • 84.57
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
5.66e3
  • 5.66e3
81.05
  • 81.05
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
6.62e3
  • 6.62e3
  • 7.28e3
  • 8.77e3
  • 8.78e3
  • 9.74e3
  • 1.10e4
77.84
  • 77.84
  • 75.63
  • 70.63
  • 70.61
  • 67.38
  • 63.17
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
6.66e3
  • 6.66e3
77.71
  • 77.71
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
6.72e3
  • 6.72e3
77.52
  • 77.52
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
6.74e3
  • 6.74e3
77.44
  • 77.44
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
6.86e3
  • 6.86e3
77.02
  • 77.02
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
7.85e3
  • 7.85e3
  • 1.03e4
  • 1.05e4
  • 1.08e4
  • 1.09e4
  • 1.11e4
  • 1.21e4
  • 1.25e4
  • 1.29e4
  • 1.39e4
  • 1.43e4
  • 1.49e4
  • 1.50e4
  • 1.51e4
  • 1.57e4
  • 1.64e4
  • 1.69e4
73.72
  • 73.72
  • 65.60
  • 64.73
  • 63.88
  • 63.34
  • 62.67
  • 59.60
  • 58.26
  • 56.76
  • 53.57
  • 52.23
  • 50.25
  • 49.92
  • 49.50
  • 47.48
  • 44.93
  • 43.37
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
7.94e3
  • 7.94e3
  • 9.22e3
  • 1.01e4
  • 1.07e4
  • 1.10e4
  • 1.14e4
  • 1.32e4
  • 1.38e4
  • 1.39e4
  • 1.41e4
73.42
  • 73.42
  • 69.12
  • 66.16
  • 64.25
  • 63.15
  • 61.92
  • 55.82
  • 53.82
  • 53.33
  • 52.84
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
8.07e3
  • 8.07e3
  • 1.12e4
  • 1.16e4
  • 1.48e4
72.99
  • 72.99
  • 62.38
  • 61.09
  • 50.34
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
8.08e3
  • 8.08e3
72.95
  • 72.95
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
8.45e3
  • 8.45e3
71.72
  • 71.72
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
9.74e3
  • 9.74e3
  • 1.15e4
67.39
  • 67.39
  • 61.43
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
9.77e3
  • 9.77e3
67.29
  • 67.29
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.02e4
  • 1.02e4
65.87
  • 65.87
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.06e4
  • 1.06e4
64.67
  • 64.67
AEIR
  • AEIR
UBERON:0001017central nervous system
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
1.07e4
  • 1.07e4
  • 1.07e4
  • 1.12e4
  • 1.18e4
64.28
  • 64.28
  • 64.27
  • 62.49
  • 60.50
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
1.07e4
  • 1.07e4
64.04
  • 64.04
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.08e4
  • 1.08e4
63.68
  • 63.68
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.09e4
  • 1.09e4
63.46
  • 63.46
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.12e4
  • 1.12e4
62.39
  • 62.39
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.14e4
  • 1.14e4
61.77
  • 61.77
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.17e4
  • 1.17e4
60.90
  • 60.90
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.20e4
  • 1.20e4
59.66
  • 59.66
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000104life cycle
1.25e4
  • 1.25e4
  • 1.45e4
  • 1.49e4
58.15
  • 58.15
  • 51.41
  • 49.94
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
1.35e4
  • 1.35e4
  • 1.39e4
  • 1.71e4
54.80
  • 54.80
  • 53.30
  • 42.69
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
1.65e4
  • 1.65e4
  • 1.78e4
44.85
  • 44.85
  • 40.56
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLCT954330
EnsemblENSDARG00000054789 (lysmd1)
Uniprot/SPTREMBLF1R068, F1R068_DANRE
ZFINZDB-GENE-060929-1094 (lysmd1)

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