D. rerio Gene: rfc1 - ENSDARG00000054799 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000054799
Namerfc1
Descriptionreplication factor C (activator 1) 1 [Source:ZFIN;Acc:ZDB-GENE-070410-99]
OrganismDanio rerio (zebrafish)
Synonym(s)si:dkey-170e5.1, zgc:162875

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0000066fully formed stage
2.20e3
  • 2.20e3
92.64
  • 92.64
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
2.49e3
  • 2.49e3
91.68
  • 91.68
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.88e3
  • 2.88e3
90.36
  • 90.36
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
2.93e3
  • 2.93e3
  • 3.41e3
  • 4.27e3
  • 8.48e3
  • 9.10e3
90.20
  • 90.20
  • 88.59
  • 85.70
  • 71.61
  • 69.53
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
3.03e3
  • 3.03e3
  • 4.14e3
  • 6.09e3
  • 8.35e3
89.86
  • 89.86
  • 86.15
  • 79.61
  • 72.04
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
3.29e3
  • 3.29e3
89.00
  • 89.00
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
3.32e3
  • 3.32e3
88.90
  • 88.90
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
3.32e3
  • 3.32e3
  • 3.44e3
  • 4.32e3
  • 4.74e3
  • 5.07e3
  • 5.94e3
  • 5.98e3
  • 6.24e3
  • 6.69e3
  • 8.60e3
88.88
  • 88.88
  • 88.48
  • 85.54
  • 84.12
  • 83.03
  • 80.12
  • 79.99
  • 79.09
  • 77.61
  • 71.22
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
3.47e3
  • 3.47e3
88.38
  • 88.38
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
3.56e3
  • 3.56e3
88.08
  • 88.08
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000106zygote stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000037Larval:Day 5
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
3.66e3
  • 3.66e3
  • 3.79e3
  • 4.23e3
  • 5.70e3
  • 6.17e3
  • 6.27e3
  • 6.28e3
  • 6.58e3
  • 7.06e3
  • 7.56e3
  • 7.56e3
  • 8.83e3
  • 8.84e3
  • 9.09e3
  • 1.42e4
  • 1.49e4
  • 1.50e4
87.74
  • 87.74
  • 87.32
  • 85.83
  • 80.90
  • 79.33
  • 79.01
  • 78.97
  • 77.97
  • 76.35
  • 74.68
  • 74.68
  • 70.42
  • 70.41
  • 69.55
  • 52.43
  • 50.20
  • 49.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
4.78e3
  • 4.78e3
84.01
  • 84.01
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
5.01e3
  • 5.01e3
  • 9.00e3
83.23
  • 83.23
  • 69.87
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
5.47e3
  • 5.47e3
81.69
  • 81.69
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
5.52e3
  • 5.52e3
81.52
  • 81.52
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
5.60e3
  • 5.60e3
81.26
  • 81.26
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
5.65e3
  • 5.65e3
  • 8.77e3
81.07
  • 81.07
  • 70.64
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
5.66e3
  • 5.66e3
  • 7.73e3
  • 7.93e3
  • 8.38e3
  • 8.96e3
  • 9.39e3
81.04
  • 81.04
  • 74.10
  • 73.46
  • 71.94
  • 70.00
  • 68.57
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
5.95e3
  • 5.95e3
80.07
  • 80.07
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
6.33e3
  • 6.33e3
78.81
  • 78.81
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
6.71e3
  • 6.71e3
77.52
  • 77.52
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
6.73e3
  • 6.73e3
77.48
  • 77.48
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
6.93e3
  • 6.93e3
76.81
  • 76.81
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
7.71e3
  • 7.71e3
  • 1.42e4
74.19
  • 74.19
  • 52.37
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
8.06e3
  • 8.06e3
  • 9.10e3
  • 9.53e3
73.02
  • 73.02
  • 69.52
  • 68.08
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
8.07e3
  • 8.07e3
73.00
  • 73.00
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
8.22e3
  • 8.22e3
72.48
  • 72.48
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
8.33e3
  • 8.33e3
  • 8.46e3
72.12
  • 72.12
  • 71.69
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
8.36e3
  • 8.36e3
72.01
  • 72.01
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
9.79e3
  • 9.79e3
67.23
  • 67.23
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
9.86e3
  • 9.86e3
66.97
  • 66.97
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.00e4
  • 1.00e4
66.47
  • 66.47
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.08e4
  • 1.08e4
63.95
  • 63.95
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Cross-references

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