D. rerio Gene: sec13 - ENSDARG00000054807 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000054807
Namesec13
DescriptionSEC13 homolog, nuclear pore and COPII coat complex component [Source:ZFIN;Acc:ZDB-GENE-040426-2649]
OrganismDanio rerio (zebrafish)
Synonym(s)cb271, sb:cb271, sec13l1, wu:fa08f09, zgc:63980
Orthologs(s)25 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
821
  • 821
  • 1.30e3
  • 1.89e3
  • 2.01e3
  • 2.83e3
  • 2.91e3
97.25
  • 97.25
  • 95.64
  • 93.67
  • 93.27
  • 90.54
  • 90.27
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
951
  • 951
96.82
  • 96.82
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
994
  • 994
  • 1.79e3
  • 2.72e3
  • 4.17e3
  • 4.32e3
96.68
  • 96.68
  • 94.01
  • 90.91
  • 86.04
  • 85.53
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
1.07e3
  • 1.07e3
  • 1.50e4
96.43
  • 96.43
  • 49.92
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
1.09e3
  • 1.09e3
  • 1.25e3
  • 1.26e3
  • 2.01e3
  • 2.11e3
  • 2.30e3
  • 2.33e3
  • 2.39e3
  • 2.85e3
  • 3.91e3
96.35
  • 96.35
  • 95.80
  • 95.78
  • 93.28
  • 92.94
  • 92.31
  • 92.21
  • 92.01
  • 90.46
  • 86.90
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.33e3
  • 1.33e3
95.54
  • 95.54
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
1.61e3
  • 1.61e3
  • 3.42e3
  • 1.21e4
94.62
  • 94.62
  • 88.54
  • 59.59
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.68e3
  • 1.68e3
94.37
  • 94.37
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.71e3
  • 1.71e3
94.28
  • 94.28
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
  • ZFS:0000035Larval:Protruding-mouth
1.73e3
  • 1.73e3
  • 1.12e4
  • 1.24e4
94.20
  • 94.20
  • 62.50
  • 58.33
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
1.82e3
  • 1.82e3
  • 4.96e3
93.91
  • 93.91
  • 83.39
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.87e3
  • 1.87e3
93.75
  • 93.75
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.92e3
  • 1.92e3
93.57
  • 93.57
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.98e3
  • 1.98e3
93.38
  • 93.38
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
2.17e3
  • 2.17e3
92.73
  • 92.73
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.20e3
  • 2.20e3
92.63
  • 92.63
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
2.27e3
  • 2.27e3
92.40
  • 92.40
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
2.31e3
  • 2.31e3
  • 3.59e3
92.28
  • 92.28
  • 88.00
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
2.42e3
  • 2.42e3
91.91
  • 91.91
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000036Larval:Day 4
2.44e3
  • 2.44e3
  • 1.28e4
  • 1.31e4
91.84
  • 91.84
  • 57.13
  • 56.24
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
2.54e3
  • 2.54e3
  • 3.39e3
  • 3.61e3
91.51
  • 91.51
  • 88.66
  • 87.91
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000036Larval:Day 4
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000033Hatching:Long-pec
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • ZFS:0000037Larval:Day 5
  • UBERON:0000106zygote stage
  • UBERON:0000068embryo stage
  • ZFS:0000049segmentation
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
2.62e3
  • 2.62e3
  • 2.72e3
  • 3.03e3
  • 3.03e3
  • 3.10e3
  • 3.34e3
  • 3.61e3
  • 3.85e3
  • 4.03e3
  • 4.18e3
  • 4.27e3
  • 4.32e3
  • 4.71e3
  • 6.79e3
  • 6.79e3
  • 7.24e3
  • 9.99e3
  • 1.40e4
  • 1.45e4
  • 1.46e4
  • 1.47e4
91.23
  • 91.23
  • 90.91
  • 89.85
  • 89.85
  • 89.61
  • 88.81
  • 87.91
  • 87.10
  • 86.51
  • 86.01
  • 85.71
  • 85.53
  • 84.24
  • 77.27
  • 77.27
  • 75.75
  • 66.56
  • 53.03
  • 51.51
  • 51.12
  • 50.90
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
2.66e3
  • 2.66e3
  • 2.80e3
  • 1.12e4
91.10
  • 91.10
  • 90.61
  • 62.50
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
2.68e3
  • 2.68e3
91.03
  • 91.03
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
2.68e3
  • 2.68e3
91.02
  • 91.02
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
2.81e3
  • 2.81e3
90.61
  • 90.61
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
3.10e3
  • 3.10e3
89.62
  • 89.62
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
3.30e3
  • 3.30e3
88.96
  • 88.96
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
3.57e3
  • 3.57e3
  • 4.10e3
  • 7.96e3
  • 9.24e3
  • 1.20e4
  • 1.30e4
88.06
  • 88.06
  • 86.28
  • 73.34
  • 69.05
  • 59.98
  • 56.49
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
5.24e3
  • 5.24e3
82.47
  • 82.47
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
6.02e3
  • 6.02e3
79.85
  • 79.85
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
6.09e3
  • 6.09e3
79.60
  • 79.60
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
6.77e3
  • 6.77e3
77.34
  • 77.34
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • UBERON:0000104life cycle
6.89e3
  • 6.89e3
  • 8.54e3
  • 8.79e3
  • 8.96e3
  • 9.13e3
  • 9.13e3
  • 1.49e4
76.92
  • 76.92
  • 71.41
  • 70.57
  • 69.98
  • 69.43
  • 69.43
  • 49.97
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
7.12e3
  • 7.12e3
76.15
  • 76.15
AEIR
  • AEIR
UBERON:0002100trunk
  • ZFS:0000035Larval:Protruding-mouth
9.96e3
  • 9.96e3
66.67
  • 66.67
AEIR
  • AEIR
UBERON:0004741cleithrum
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
1.12e4
  • 1.12e4
  • 1.22e4
62.49
  • 62.49
  • 59.08
AEIR
  • AEIR
  • AEIR
UBERON:0002328notochord
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
1.12e4
  • 1.12e4
  • 1.14e4
  • 1.20e4
  • 1.32e4
  • 1.34e4
  • 1.36e4
  • 1.36e4
62.48
  • 62.48
  • 61.75
  • 59.98
  • 55.97
  • 54.97
  • 54.52
  • 54.52
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.18e4
  • 1.18e4
  • 1.21e4
  • 1.23e4
  • 1.26e4
  • 1.26e4
  • 1.41e4
  • 1.41e4
60.50
  • 60.50
  • 59.50
  • 58.80
  • 57.87
  • 57.87
  • 52.75
  • 52.75
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003051ear vesicle
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
1.18e4
  • 1.18e4
  • 1.20e4
60.50
  • 60.50
  • 59.98
AEIR
  • AEIR
  • AEIR
UBERON:0007269pectoral appendage musculature
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.18e4
  • 1.18e4
  • 1.18e4
  • 1.40e4
  • 1.40e4
60.50
  • 60.50
  • 60.50
  • 53.10
  • 53.10
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2001357alar plate midbrain
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
1.20e4
  • 1.20e4
  • 1.26e4
  • 1.26e4
59.98
  • 59.98
  • 57.87
  • 57.87
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004128optic vesicle
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
1.23e4
  • 1.23e4
  • 1.23e4
  • 1.23e4
58.80
  • 58.80
  • 58.80
  • 58.80
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
1.30e4
  • 1.30e4
56.48
  • 56.48
AEIR
  • AEIR
UBERON:0011004pharyngeal arch cartilage
  • ZFS:0000036Larval:Day 4
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0000017exocrine pancreas
  • ZFS:0000036Larval:Day 4
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 49.99
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi18 species18 genesCompare expression
Bilateria25 species25 genesCompare expression

Orthology information comes from OMA : ENSDARG00000054807.

Cross-references

EnsemblENSDARG00000054807 (sec13)
ZFINZDB-GENE-040426-2649 (sec13)
EMBLBC054585, BC153483, BX537350, CT027575
Uniprot/SPTREMBLQ7T2E1, Q7T2E1_DANRE

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