D. rerio Gene: six2b - ENSDARG00000054878 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000054878
Namesix2b
DescriptionSIX homeobox 2b [Source:ZFIN;Acc:ZDB-GENE-080723-23]
OrganismDanio rerio (zebrafish)
Synonym(s)loc566454, zgc:195089, zgc:195096

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
8.37e3
  • 8.37e3
  • 1.06e4
  • 1.11e4
  • 1.20e4
  • 1.47e4
71.97
  • 71.97
  • 64.56
  • 62.95
  • 59.71
  • 50.73
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
9.34e3
  • 9.34e3
  • 1.19e4
68.73
  • 68.73
  • 60.20
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.13e4
  • 1.13e4
62.11
  • 62.11
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.38e4
  • 1.38e4
53.78
  • 53.78
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
1.76e4
  • 1.76e4
41.16
  • 41.16
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.59
  • 40.59
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
1.89e4
  • 1.89e4
36.82
  • 36.82
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.94e4
  • 1.94e4
34.98
  • 34.98
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.01e4
  • 2.01e4
32.54
  • 32.54
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
2.07e4
  • 2.07e4
30.73
  • 30.73
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.26e4
  • 2.26e4
24.37
  • 24.37
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Cross-references

EMBLBC163151, BC163156, CR932018
EnsemblENSDARG00000054878 (six2b)
Uniprot/SPTREMBLB3DIJ7, B3DIJ7_DANRE
ZFINZDB-GENE-080723-23 (six2b)

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