D. rerio Gene: six3b - ENSDARG00000054879 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000054879
Namesix3b
DescriptionSIX homeobox 3b [Source:ZFIN;Acc:ZDB-GENE-990415-128]
OrganismDanio rerio (zebrafish)
Synonym(s)cb347, six3, six3.2, six6, six6gn
Orthologs(s)1 orthologs
Paralog(s)7 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.33e3
  • 1.33e3
95.56
  • 95.56
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000032Pharyngula:High-pec
  • UBERON:0000066fully formed stage
1.40e3
  • 1.40e3
  • 7.18e3
  • 8.78e3
  • 1.04e4
  • 1.05e4
  • 1.65e4
95.33
  • 95.33
  • 75.98
  • 70.59
  • 65.19
  • 64.98
  • 44.67
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.72e3
  • 1.72e3
  • 1.22e4
94.23
  • 94.23
  • 58.99
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
2.23e3
  • 2.23e3
  • 8.37e3
  • 1.06e4
  • 1.20e4
  • 1.42e4
92.54
  • 92.54
  • 71.97
  • 64.67
  • 59.80
  • 52.62
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000037Larval:Day 5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000042Juvenile:Days 30-44
  • UBERON:0000068embryo stage
  • ZFS:0000049segmentation
  • UBERON:0000104life cycle
2.84e3
  • 2.84e3
  • 4.70e3
  • 5.38e3
  • 5.62e3
  • 6.63e3
  • 8.14e3
  • 8.20e3
  • 8.92e3
  • 9.22e3
  • 9.38e3
  • 1.04e4
  • 1.05e4
  • 1.26e4
  • 1.34e4
  • 1.48e4
  • 1.49e4
  • 1.50e4
90.48
  • 90.48
  • 84.25
  • 81.99
  • 81.18
  • 77.79
  • 72.76
  • 72.56
  • 70.12
  • 69.12
  • 68.60
  • 65.33
  • 64.69
  • 57.75
  • 55.27
  • 50.61
  • 49.95
  • 49.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0000068embryo stage
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
4.19e3
  • 4.19e3
  • 4.19e3
  • 5.36e3
  • 5.63e3
  • 6.25e3
  • 6.27e3
  • 6.87e3
  • 7.68e3
  • 8.70e3
  • 1.41e4
85.98
  • 85.98
  • 85.96
  • 82.05
  • 81.15
  • 79.07
  • 79.02
  • 77.00
  • 74.28
  • 70.88
  • 52.72
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004128optic vesicle
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
4.27e3
  • 4.27e3
  • 4.98e3
  • 8.04e3
  • 9.34e3
  • 1.05e4
  • 1.05e4
  • 1.05e4
85.71
  • 85.71
  • 83.33
  • 73.07
  • 68.74
  • 64.69
  • 64.69
  • 64.69
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2007026forebrain neural keel
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000025Segmentation:10-13 somites
4.27e3
  • 4.27e3
  • 8.04e3
  • 9.96e3
  • 1.03e4
85.71
  • 85.71
  • 73.07
  • 66.67
  • 65.37
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
4.59e3
  • 4.59e3
  • 8.03e3
  • 9.03e3
84.62
  • 84.62
  • 73.13
  • 69.76
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001890forebrain
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000024Segmentation:5-9 somites
4.98e3
  • 4.98e3
  • 4.98e3
  • 7.47e3
  • 9.19e3
  • 9.96e3
  • 1.03e4
  • 1.07e4
  • 1.14e4
  • 1.14e4
  • 1.49e4
83.34
  • 83.34
  • 83.33
  • 74.99
  • 69.22
  • 66.65
  • 65.37
  • 64.27
  • 61.75
  • 61.75
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
5.27e3
  • 5.27e3
  • 5.98e3
  • 7.12e3
  • 7.47e3
  • 7.97e3
  • 8.30e3
  • 8.96e3
  • 8.96e3
  • 9.13e3
  • 9.13e3
  • 9.96e3
  • 9.96e3
82.35
  • 82.35
  • 79.99
  • 76.18
  • 74.99
  • 73.32
  • 72.21
  • 69.99
  • 69.99
  • 69.43
  • 69.43
  • 66.65
  • 66.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001017central nervous system
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
5.34e3
  • 5.34e3
  • 9.19e3
  • 9.60e3
  • 9.60e3
  • 9.96e3
  • 1.02e4
  • 1.05e4
  • 1.05e4
82.14
  • 82.14
  • 69.22
  • 67.85
  • 67.85
  • 66.65
  • 65.77
  • 64.69
  • 64.69
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003071eye primordium
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
5.34e3
  • 5.34e3
  • 7.47e3
  • 8.04e3
  • 1.03e4
82.14
  • 82.14
  • 75.00
  • 73.07
  • 65.37
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0010312immature eye
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000025Segmentation:10-13 somites
5.81e3
  • 5.81e3
  • 7.12e3
  • 8.65e3
  • 1.05e4
  • 1.49e4
80.55
  • 80.55
  • 76.18
  • 71.04
  • 64.69
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
6.64e3
  • 6.64e3
  • 9.34e3
  • 1.04e4
  • 1.09e4
  • 1.10e4
  • 1.10e4
77.77
  • 77.77
  • 68.73
  • 65.19
  • 63.61
  • 63.14
  • 63.02
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001792ganglionic layer of retina
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
6.97e3
  • 6.97e3
  • 9.96e3
76.66
  • 76.66
  • 66.66
AEIR
  • AEIR
  • AEIR
UBERON:0001893telencephalon
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000025Segmentation:10-13 somites
7.08e3
  • 7.08e3
  • 7.47e3
  • 9.13e3
  • 9.44e3
  • 1.02e4
  • 1.08e4
  • 1.10e4
  • 1.12e4
  • 1.24e4
76.30
  • 76.30
  • 74.98
  • 69.43
  • 68.40
  • 65.77
  • 63.87
  • 63.14
  • 62.48
  • 58.33
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005725olfactory system
  • ZFS:0000031Pharyngula:Prim-25
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0000924ectoderm
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000022Gastrula:Bud
7.47e3
  • 7.47e3
  • 9.96e3
  • 1.19e4
  • 1.19e4
  • 1.24e4
75.00
  • 75.00
  • 66.66
  • 59.99
  • 59.99
  • 58.32
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000035Larval:Protruding-mouth
8.15e3
  • 8.15e3
  • 8.71e3
  • 9.96e3
  • 1.07e4
  • 1.24e4
  • 1.34e4
72.72
  • 72.72
  • 70.82
  • 66.65
  • 64.27
  • 58.33
  • 55.16
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
8.53e3
  • 8.53e3
  • 1.09e4
  • 1.49e4
71.43
  • 71.43
  • 63.60
  • 49.94
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2001378axial hypoblast
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
8.96e3
  • 8.96e3
  • 1.49e4
70.00
  • 70.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0002346neurectoderm
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
9.96e3
  • 9.96e3
  • 9.96e3
  • 1.33e4
66.67
  • 66.67
  • 66.66
  • 55.55
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009610forebrain neural plate
  • ZFS:0000022Gastrula:Bud
9.96e3
  • 9.96e3
66.67
  • 66.67
AEIR
  • AEIR
UBERON:0000089hypoblast (generic)
  • ZFS:0000019Gastrula:Shield
9.96e3
  • 9.96e3
66.66
  • 66.66
AEIR
  • AEIR
UBERON:0001791inner nuclear layer of retina
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
9.96e3
  • 9.96e3
  • 1.09e4
66.66
  • 66.66
  • 63.63
AEIR
  • AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
9.96e3
  • 9.96e3
  • 1.07e4
66.65
  • 66.65
  • 64.27
AEIR
  • AEIR
  • AEIR
UBERON:0001943midbrain tegmentum
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
1.03e4
  • 1.03e4
  • 1.12e4
  • 1.33e4
  • 1.41e4
65.61
  • 65.61
  • 62.48
  • 55.53
  • 52.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.04e4
  • 1.04e4
65.05
  • 65.05
AEIR
  • AEIR
UBERON:0003098optic stalk
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
1.12e4
  • 1.12e4
  • 1.29e4
  • 1.49e4
62.50
  • 62.50
  • 56.65
  • 49.98
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2007034forebrain neural rod
  • ZFS:0000024Segmentation:5-9 somites
1.12e4
  • 1.12e4
62.49
  • 62.49
AEIR
  • AEIR
UBERON:0003068axial mesoderm
  • ZFS:0000023Segmentation:1-4 somites
1.28e4
  • 1.28e4
57.14
  • 57.14
AEIR
  • AEIR
UBERON:0003072optic cup
  • ZFS:0000029Pharyngula:Prim-5
1.34e4
  • 1.34e4
54.99
  • 54.99
AEIR
  • AEIR
UBERON:0001049neural tube
  • ZFS:0000026Segmentation:14-19 somites
1.34e4
  • 1.34e4
54.97
  • 54.97
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
1.36e4
  • 1.36e4
  • 1.39e4
  • 1.49e4
54.53
  • 54.53
  • 53.55
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000926mesoderm
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
1.38e4
  • 1.38e4
  • 1.38e4
  • 1.38e4
  • 1.38e4
  • 1.38e4
  • 1.39e4
53.83
  • 53.83
  • 53.83
  • 53.83
  • 53.83
  • 53.83
  • 53.55
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006222future diencephalon
  • ZFS:0000024Segmentation:5-9 somites
1.38e4
  • 1.38e4
53.83
  • 53.83
AEIR
  • AEIR
UBERON:2000004anterior axial hypoblast
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
1.39e4
  • 1.39e4
  • 1.39e4
  • 1.39e4
  • 1.39e4
  • 1.39e4
  • 1.39e4
53.55
  • 53.55
  • 53.55
  • 53.55
  • 53.55
  • 53.55
  • 53.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.46e4
  • 1.46e4
51.00
  • 51.00
AEIR
  • AEIR
CL:0000221ectodermal cell
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0002196adenohypophysis
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0003073lens placode
  • ZFS:0000026Segmentation:14-19 somites
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.77
  • 40.77
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.52e4
  • 2.52e4
15.63
  • 15.63
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Bilateria1 species1 geneCompare expression

Orthology information comes from OMA : ENSDARG00000054879.

Paralogs (same species)

Cross-references

EnsemblENSDARG00000054879 (six3b)
ZFINZDB-GENE-990415-128 (six3b)
EMBLAB004881, AF030281, BC059425, CR932018
Uniprot/SPTREMBLO73709, O73709_DANRE

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