D. rerio Gene: cd40 - ENSDARG00000054968 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000054968
Namecd40
DescriptionCD40 molecule, TNF receptor superfamily member 5 [Source:ZFIN;Acc:ZDB-GENE-090313-95]
OrganismDanio rerio (zebrafish)
Synonym(s)e9qet7, si:ch211-231h20.3, tnfsrf5

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.80e3
  • 1.80e3
93.96
  • 93.96
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.90e3
  • 1.90e3
93.66
  • 93.66
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
3.12e3
  • 3.12e3
89.55
  • 89.55
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
3.65e3
  • 3.65e3
87.80
  • 87.80
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
4.00e3
  • 4.00e3
86.61
  • 86.61
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
4.17e3
  • 4.17e3
86.04
  • 86.04
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
4.66e3
  • 4.66e3
84.42
  • 84.42
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
5.07e3
  • 5.07e3
83.03
  • 83.03
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
5.24e3
  • 5.24e3
82.47
  • 82.47
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
5.91e3
  • 5.91e3
  • 1.54e4
80.23
  • 80.23
  • 48.51
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
6.04e3
  • 6.04e3
79.77
  • 79.77
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
6.37e3
  • 6.37e3
78.69
  • 78.69
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
6.86e3
  • 6.86e3
77.02
  • 77.02
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
7.09e3
  • 7.09e3
76.26
  • 76.26
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
9.84e3
  • 9.84e3
67.07
  • 67.07
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.13e4
  • 1.13e4
62.19
  • 62.19
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
1.74e4
  • 1.74e4
  • 1.76e4
  • 1.82e4
  • 1.94e4
  • 1.98e4
41.87
  • 41.87
  • 41.16
  • 38.95
  • 35.16
  • 33.73
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.88e4
  • 1.88e4
  • 2.01e4
37.04
  • 37.04
  • 32.73
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Cross-references

EnsemblENSDARG00000054968 (cd40)
ZFINZDB-GENE-090313-95 (cd40)
EMBLCR381544, FJ172754
Uniprot/SPTREMBLB8X730, B8X730_DANRE

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