D. rerio Gene: col4a1 - ENSDARG00000055009 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000055009
Namecol4a1
Descriptioncollagen, type IV, alpha 1 [Source:ZFIN;Acc:ZDB-GENE-081105-114]
OrganismDanio rerio (zebrafish)
Synonym(s)col4a5, fj65e07, im:7157877, si:ch211-174g17.1, wu:fj65e07
Orthologs(s)17 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
588
  • 588
98.03
  • 98.03
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.03e3
  • 1.03e3
96.55
  • 96.55
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.06e3
  • 1.06e3
  • 2.02e3
96.45
  • 96.45
  • 93.23
AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
1.08e3
  • 1.08e3
  • 1.52e3
  • 2.90e3
  • 3.18e3
  • 4.12e3
  • 4.63e3
  • 4.66e3
  • 5.05e3
  • 8.48e3
  • 1.43e4
  • 1.48e4
96.37
  • 96.37
  • 94.90
  • 90.29
  • 89.35
  • 86.20
  • 84.48
  • 84.41
  • 83.08
  • 71.60
  • 52.10
  • 50.55
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
1.13e3
  • 1.13e3
96.21
  • 96.21
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.56e3
  • 1.56e3
94.79
  • 94.79
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.62e3
  • 1.62e3
  • 4.36e3
  • 5.64e3
94.59
  • 94.59
  • 85.40
  • 81.13
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.93e3
  • 1.93e3
93.55
  • 93.55
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.93e3
  • 1.93e3
93.53
  • 93.53
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
2.15e3
  • 2.15e3
92.82
  • 92.82
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
2.20e3
  • 2.20e3
  • 4.01e3
92.65
  • 92.65
  • 86.58
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
2.22e3
  • 2.22e3
92.58
  • 92.58
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
3.19e3
  • 3.19e3
89.32
  • 89.32
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
3.44e3
  • 3.44e3
88.49
  • 88.49
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
4.04e3
  • 4.04e3
86.49
  • 86.49
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
4.58e3
  • 4.58e3
  • 1.26e4
84.67
  • 84.67
  • 57.91
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000030Pharyngula:Prim-15
4.62e3
  • 4.62e3
  • 4.78e3
  • 5.32e3
  • 5.82e3
  • 7.61e3
  • 7.80e3
  • 9.31e3
  • 1.01e4
  • 1.04e4
  • 1.04e4
84.53
  • 84.53
  • 83.98
  • 82.17
  • 80.50
  • 74.52
  • 73.89
  • 68.84
  • 66.33
  • 65.25
  • 65.12
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
6.29e3
  • 6.29e3
78.93
  • 78.93
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000025Segmentation:10-13 somites
7.47e3
  • 7.47e3
  • 8.96e3
  • 9.96e3
  • 1.08e4
75.00
  • 75.00
  • 69.99
  • 66.66
  • 63.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004535cardiovascular system
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
7.47e3
  • 7.47e3
  • 7.97e3
  • 8.15e3
  • 8.15e3
  • 8.30e3
  • 8.54e3
  • 8.54e3
74.99
  • 74.99
  • 73.32
  • 72.72
  • 72.72
  • 72.22
  • 71.42
  • 71.42
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
8.05e3
  • 8.05e3
  • 1.02e4
  • 1.13e4
73.04
  • 73.04
  • 66.00
  • 62.23
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
8.93e3
  • 8.93e3
  • 1.16e4
70.09
  • 70.09
  • 61.07
AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
9.09e3
  • 9.09e3
69.55
  • 69.55
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
9.43e3
  • 9.43e3
68.43
  • 68.43
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.02e4
  • 1.02e4
65.81
  • 65.81
AEIR
  • AEIR
UBERON:0002049vasculature
  • ZFS:0000029Pharyngula:Prim-5
1.19e4
  • 1.19e4
60.00
  • 60.00
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.23e4
  • 1.23e4
58.73
  • 58.73
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.56e4
  • 1.56e4
47.61
  • 47.61
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.63e4
  • 1.63e4
45.53
  • 45.53
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.64e4
  • 1.64e4
45.14
  • 45.14
AEIR
  • AEIR
UBERON:0004734gastrula
  • UBERON:0000109gastrula stage
  • ZFS:0000022Gastrula:Bud
1.75e4
  • 1.75e4
  • 1.87e4
41.42
  • 41.42
  • 37.24
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000055009.

Cross-references

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