D. rerio Gene: prox1a - ENSDARG00000055158 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000055158
Nameprox1a
Descriptionprospero homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-980526-397]
OrganismDanio rerio (zebrafish)
Synonym(s)prox1, zgc:111888

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000031Pharyngula:Prim-25
456
  • 456
  • 4.75e3
  • 8.96e3
  • 1.06e4
98.48
  • 98.48
  • 84.10
  • 69.98
  • 64.56
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000034Hatching:Pec-fin
996
  • 996
  • 1.24e3
  • 2.13e3
  • 2.83e3
  • 6.40e3
  • 1.12e4
  • 1.31e4
  • 1.49e4
96.67
  • 96.67
  • 95.84
  • 92.86
  • 90.52
  • 78.56
  • 62.48
  • 56.24
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000319mucus secreting cell
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
1.15e3
  • 1.15e3
  • 1.15e3
  • 1.15e3
  • 6.64e3
  • 7.47e3
96.16
  • 96.16
  • 96.16
  • 96.16
  • 77.77
  • 74.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003894liver primordium
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
1.24e3
  • 1.24e3
  • 4.98e3
  • 4.98e3
95.84
  • 95.84
  • 83.33
  • 83.33
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005426lens vesicle
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
1.49e3
  • 1.49e3
  • 2.64e3
  • 2.80e3
95.00
  • 95.00
  • 91.17
  • 90.62
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
2.35e3
  • 2.35e3
  • 3.85e3
92.14
  • 92.14
  • 87.12
AEIR
  • AEIR
  • AEIR
UBERON:0003921pancreas primordium
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
2.49e3
  • 2.49e3
  • 2.72e3
  • 3.45e3
91.67
  • 91.67
  • 90.91
  • 88.46
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003073lens placode
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000025Segmentation:10-13 somites
3.32e3
  • 3.32e3
  • 4.98e3
  • 7.47e3
  • 9.96e3
88.89
  • 88.89
  • 83.34
  • 75.00
  • 66.67
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
3.53e3
  • 3.53e3
88.19
  • 88.19
AEIR
  • AEIR
UBERON:0003922pancreatic epithelial bud
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
3.73e3
  • 3.73e3
  • 4.07e3
  • 9.96e3
  • 1.49e4
87.50
  • 87.50
  • 86.36
  • 66.66
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000032Pharyngula:High-pec
4.27e3
  • 4.27e3
  • 4.48e3
  • 5.87e3
  • 7.80e3
  • 8.22e3
  • 8.96e3
  • 1.02e4
85.71
  • 85.71
  • 84.99
  • 80.34
  • 73.90
  • 72.48
  • 69.98
  • 65.77
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000022Gastrula:Bud
4.36e3
  • 4.36e3
  • 4.85e3
  • 5.59e3
  • 7.37e3
  • 7.67e3
  • 8.08e3
  • 8.10e3
  • 1.10e4
  • 1.44e4
  • 1.46e4
  • 1.49e4
85.41
  • 85.41
  • 83.75
  • 81.30
  • 75.32
  • 74.33
  • 72.94
  • 72.88
  • 63.32
  • 51.70
  • 51.06
  • 50.01
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
4.48e3
  • 4.48e3
  • 4.48e3
  • 5.60e3
  • 1.39e4
84.99
  • 84.99
  • 84.99
  • 81.24
  • 53.41
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006857interrenal primordium
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000033Hatching:Long-pec
4.98e3
  • 4.98e3
  • 7.47e3
  • 9.96e3
  • 1.49e4
  • 1.49e4
83.34
  • 83.34
  • 75.00
  • 66.67
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000031Pharyngula:Prim-25
4.98e3
  • 4.98e3
  • 8.54e3
  • 8.96e3
83.33
  • 83.33
  • 71.42
  • 69.99
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002540lateral line system
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
4.98e3
  • 4.98e3
  • 4.98e3
  • 4.98e3
  • 8.54e3
  • 8.54e3
83.33
  • 83.33
  • 83.33
  • 83.33
  • 71.42
  • 71.42
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
5.17e3
  • 5.17e3
  • 5.63e3
  • 6.68e3
  • 8.53e3
  • 1.03e4
  • 1.18e4
  • 1.31e4
  • 1.34e4
  • 1.47e4
  • 1.52e4
82.70
  • 82.70
  • 81.15
  • 77.63
  • 71.44
  • 65.61
  • 60.41
  • 56.08
  • 55.18
  • 50.89
  • 49.24
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001049neural tube
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
5.20e3
  • 5.20e3
  • 5.23e3
  • 5.23e3
82.60
  • 82.60
  • 82.49
  • 82.49
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000540neuron
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
5.23e3
  • 5.23e3
  • 5.23e3
  • 6.11e3
  • 9.34e3
  • 9.34e3
82.49
  • 82.49
  • 82.49
  • 79.53
  • 68.74
  • 68.74
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000039Larval:Days 7-13
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
5.23e3
  • 5.23e3
  • 5.23e3
  • 5.87e3
  • 7.47e3
  • 8.83e3
  • 9.51e3
  • 1.24e4
82.49
  • 82.49
  • 82.49
  • 80.34
  • 75.00
  • 70.44
  • 68.16
  • 58.33
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
5.84e3
  • 5.84e3
80.44
  • 80.44
AEIR
  • AEIR
ZFA:0000003adaxial cell (Danio)
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
6.54e3
  • 6.54e3
  • 9.96e3
  • 1.19e4
78.12
  • 78.12
  • 66.67
  • 60.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
6.72e3
  • 6.72e3
  • 9.26e3
77.49
  • 77.49
  • 69.00
AEIR
  • AEIR
  • AEIR
UBERON:0001631thoracic duct
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000039Larval:Days 7-13
7.47e3
  • 7.47e3
  • 1.49e4
  • 1.49e4
75.00
  • 75.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001944pretectal region
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000039Larval:Days 7-13
7.47e3
  • 7.47e3
  • 1.49e4
75.00
  • 75.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0001264pancreas
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
7.47e3
  • 7.47e3
  • 1.28e4
74.99
  • 74.99
  • 57.14
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
8.28e3
  • 8.28e3
  • 8.69e3
  • 9.85e3
72.28
  • 72.28
  • 70.91
  • 67.03
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001714cranial ganglion
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
8.54e3
  • 8.54e3
  • 8.71e3
71.42
  • 71.42
  • 70.82
AEIR
  • AEIR
  • AEIR
UBERON:0000965lens of camera-type eye
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
8.65e3
  • 8.65e3
  • 8.96e3
  • 1.24e4
  • 1.29e4
71.04
  • 71.04
  • 69.98
  • 58.33
  • 56.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2000633caudal tuberculum
  • ZFS:0000031Pharyngula:Prim-25
8.96e3
  • 8.96e3
70.00
  • 70.00
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
9.41e3
  • 9.41e3
  • 1.16e4
68.50
  • 68.50
  • 61.10
AEIR
  • AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
9.67e3
  • 9.67e3
  • 9.96e3
67.63
  • 67.63
  • 66.65
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
9.73e3
  • 9.73e3
67.44
  • 67.44
AEIR
  • AEIR
CL:0000182hepatocyte
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000035Larval:Protruding-mouth
9.96e3
  • 9.96e3
  • 1.49e4
  • 1.49e4
66.67
  • 66.67
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.09e4
  • 1.09e4
63.47
  • 63.47
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
1.15e4
  • 1.15e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
61.55
  • 61.55
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000007pituitary gland
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
1.16e4
  • 1.16e4
  • 1.49e4
61.10
  • 61.10
  • 49.98
AEIR
  • AEIR
  • AEIR
UBERON:0001898hypothalamus
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
1.16e4
  • 1.16e4
  • 1.36e4
  • 1.39e4
61.10
  • 61.10
  • 54.53
  • 53.55
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.18e4
  • 1.18e4
60.44
  • 60.44
AEIR
  • AEIR
UBERON:2001157posterior lateral line primordium
  • ZFS:0000029Pharyngula:Prim-5
1.24e4
  • 1.24e4
58.33
  • 58.33
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.25e4
  • 1.25e4
58.21
  • 58.21
AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000033Hatching:Long-pec
1.29e4
  • 1.29e4
56.65
  • 56.65
AEIR
  • AEIR
UBERON:0003923dorsal pancreatic bud
  • ZFS:0000029Pharyngula:Prim-5
1.31e4
  • 1.31e4
56.24
  • 56.24
AEIR
  • AEIR
UBERON:0001555digestive tract
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
1.31e4
  • 1.31e4
  • 1.49e4
56.23
  • 56.23
  • 49.98
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.31e4
  • 1.31e4
56.07
  • 56.07
AEIR
  • AEIR
UBERON:0003069otic placode
  • ZFS:0000023Segmentation:1-4 somites
1.38e4
  • 1.38e4
53.83
  • 53.83
AEIR
  • AEIR
UBERON:0000926mesoderm
  • ZFS:0000029Pharyngula:Prim-5
1.40e4
  • 1.40e4
53.10
  • 53.10
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.46e4
  • 1.46e4
51.13
  • 51.13
AEIR
  • AEIR
UBERON:0001791inner nuclear layer of retina
  • ZFS:0000039Larval:Days 7-13
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0002065posterior cardinal vein
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
  • ZFS:0000039Larval:Days 7-13
  • ZFS:0000036Larval:Day 4
1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0014907intersomitic vessel
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000036Larval:Day 4
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:2005034parachordal vessel
  • ZFS:0000036Larval:Day 4
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
ZFA:0005738intestinal bulb primordium (Danio)
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
ZFA:0009398hepatoblast (Danio)
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000034Hatching:Pec-fin
1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2005115primary posterior lateral line primordium
  • ZFS:0000030Pharyngula:Prim-15
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0001928preoptic area
  • ZFS:0000031Pharyngula:Prim-25
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0000017exocrine pancreas
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0003052midbrain-hindbrain boundary
  • ZFS:0000031Pharyngula:Prim-25
1.49e4
  • 1.49e4
49.98
  • 49.98
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
1.50e4
  • 1.50e4
  • 1.75e4
49.73
  • 49.73
  • 41.42
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.61e4
  • 1.61e4
46.24
  • 46.24
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.65e4
  • 1.65e4
44.74
  • 44.74
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.93e4
  • 1.93e4
35.23
  • 35.23
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.03e4
  • 2.03e4
32.11
  • 32.11
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLBX928753
EnsemblENSDARG00000055158 (prox1a)
Uniprot/SPTREMBLF1QAE1, F1QAE1_DANRE
ZFINZDB-GENE-980526-397 (prox1a)

Do not show this banner again