D. rerio Gene: tuba1c - ENSDARG00000055216 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000055216
Nametuba1c
Descriptiontubulin, alpha 1c [Source:ZFIN;Acc:ZDB-GENE-061114-1]
OrganismDanio rerio (zebrafish)
Synonym(s)tuba1l

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
58.2
  • 58.2
  • 67.3
  • 81.3
  • 157
99.81
  • 99.81
  • 99.78
  • 99.73
  • 99.48
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
71.1
  • 71.1
  • 214
  • 285
  • 371
  • 378
  • 390
  • 411
  • 560
  • 912
  • 2.19e3
99.77
  • 99.77
  • 99.29
  • 99.05
  • 98.76
  • 98.74
  • 98.70
  • 98.63
  • 98.13
  • 96.95
  • 92.67
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
147
  • 147
  • 240
  • 382
99.51
  • 99.51
  • 99.20
  • 98.73
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000106zygote stage
  • ZFS:0000016Blastula:30%-epiboly
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
172
  • 172
  • 173
  • 195
  • 313
  • 407
  • 408
  • 443
  • 865
  • 2.66e3
  • 5.35e3
  • 6.42e3
  • 6.87e3
  • 9.82e3
  • 1.16e4
  • 1.27e4
  • 1.29e4
  • 1.43e4
  • 1.47e4
  • 1.50e4
99.43
  • 99.43
  • 99.42
  • 99.35
  • 98.95
  • 98.64
  • 98.64
  • 98.52
  • 97.11
  • 91.10
  • 82.10
  • 78.51
  • 77.01
  • 67.10
  • 61.10
  • 57.61
  • 56.65
  • 52.23
  • 50.90
  • 49.81
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000104life cycle
200
  • 200
  • 329
  • 1.04e4
99.33
  • 99.33
  • 98.90
  • 65.24
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
337
  • 337
98.88
  • 98.88
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
570
  • 570
98.10
  • 98.10
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
678
  • 678
97.73
  • 97.73
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.67e3
  • 1.67e3
  • 4.33e3
94.42
  • 94.42
  • 85.51
AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
1.99e3
  • 1.99e3
  • 1.03e4
93.34
  • 93.34
  • 65.58
AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
2.59e3
  • 2.59e3
91.32
  • 91.32
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
2.80e3
  • 2.80e3
  • 5.45e3
  • 6.32e3
  • 7.22e3
  • 1.07e4
  • 1.09e4
90.61
  • 90.61
  • 81.75
  • 78.83
  • 75.83
  • 64.16
  • 63.45
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
3.93e3
  • 3.93e3
86.84
  • 86.84
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
5.27e3
  • 5.27e3
82.36
  • 82.36
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
5.88e3
  • 5.88e3
80.31
  • 80.31
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
7.05e3
  • 7.05e3
76.41
  • 76.41
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
7.39e3
  • 7.39e3
75.26
  • 75.26
AEIR
  • AEIR
UBERON:0001016nervous system
  • ZFS:0000026Segmentation:14-19 somites
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
7.68e3
  • 7.68e3
74.28
  • 74.28
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
7.82e3
  • 7.82e3
73.82
  • 73.82
AEIR
  • AEIR
UBERON:0001017central nervous system
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
8.65e3
  • 8.65e3
  • 8.96e3
  • 9.60e3
71.04
  • 71.04
  • 69.99
  • 67.85
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
8.66e3
  • 8.66e3
70.99
  • 70.99
AEIR
  • AEIR
UBERON:0000010peripheral nervous system
  • ZFS:0000033Hatching:Long-pec
8.96e3
  • 8.96e3
70.00
  • 70.00
AEIR
  • AEIR
CL:0000540neuron
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
9.34e3
  • 9.34e3
  • 1.09e4
  • 1.20e4
68.74
  • 68.74
  • 63.61
  • 59.98
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.01e4
  • 1.01e4
66.26
  • 66.26
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.08e4
  • 1.08e4
63.72
  • 63.72
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.09e4
  • 1.09e4
63.65
  • 63.65
AEIR
  • AEIR
UBERON:0001846internal ear
  • UBERON:0000068embryo stage
1.11e4
  • 1.11e4
62.90
  • 62.90
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.14e4
  • 1.14e4
61.86
  • 61.86
AEIR
  • AEIR
UBERON:0001890forebrain
  • ZFS:0000027Segmentation:20-25 somites
1.14e4
  • 1.14e4
61.75
  • 61.75
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
1.20e4
  • 1.20e4
  • 1.22e4
  • 1.33e4
  • 1.66e4
  • 1.67e4
59.86
  • 59.86
  • 59.10
  • 55.51
  • 44.32
  • 44.17
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.21e4
  • 1.21e4
59.47
  • 59.47
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.22e4
  • 1.22e4
59.24
  • 59.24
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.30e4
  • 1.30e4
56.35
  • 56.35
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.33e4
  • 1.33e4
55.61
  • 55.61
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.42e4
  • 1.42e4
52.33
  • 52.33
AEIR
  • AEIR
UBERON:0000080mesonephros
  • UBERON:0000066fully formed stage
1.50e4
  • 1.50e4
49.88
  • 49.88
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.53e4
  • 1.53e4
48.89
  • 48.89
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.81e4
  • 1.81e4
39.48
  • 39.48
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLBX465853
EnsemblENSDARG00000055216 (tuba1c)
Uniprot/SPTREMBLB8A518, B8A518_DANRE
ZFINZDB-GENE-061114-1 (tuba1c)

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