D. rerio Gene: ncs1a - ENSDARG00000055229 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000055229
Namencs1a
Descriptionneuronal calcium sensor 1a [Source:ZFIN;Acc:ZDB-GENE-021220-1]
OrganismDanio rerio (zebrafish)
Synonym(s)freq, freqa, freqagn, ncs-1a, ncs1gn, neuronal calcium sensor-1a, zgc:63620
Orthologs(s)26 orthologs
Paralog(s)49 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000030Pharyngula:Prim-15
3.98e3
  • 3.98e3
  • 1.17e4
  • 1.22e4
  • 1.31e4
  • 1.34e4
  • 1.36e4
  • 1.49e4
  • 1.49e4
86.68
  • 86.68
  • 60.81
  • 59.08
  • 56.24
  • 54.99
  • 54.53
  • 50.00
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001840semicircular canal
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
5.97e3
  • 5.97e3
  • 7.47e3
  • 1.49e4
80.00
  • 80.00
  • 75.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
6.92e3
  • 6.92e3
76.83
  • 76.83
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
7.24e3
  • 7.24e3
  • 7.61e3
  • 1.33e4
75.75
  • 75.75
  • 74.52
  • 55.62
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
7.25e3
  • 7.25e3
  • 8.21e3
  • 9.87e3
  • 1.02e4
  • 1.03e4
  • 1.03e4
  • 1.17e4
  • 1.18e4
  • 1.30e4
  • 1.41e4
75.74
  • 75.74
  • 72.50
  • 66.95
  • 65.77
  • 65.65
  • 65.47
  • 60.67
  • 60.35
  • 56.39
  • 52.78
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
7.40e3
  • 7.40e3
  • 8.01e3
75.22
  • 75.22
  • 73.18
AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
7.47e3
  • 7.47e3
  • 9.96e3
  • 1.12e4
  • 1.19e4
  • 1.25e4
  • 1.31e4
  • 1.49e4
75.00
  • 75.00
  • 66.67
  • 62.50
  • 60.00
  • 58.30
  • 56.24
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000109gastrula stage
8.31e3
  • 8.31e3
  • 1.16e4
  • 1.23e4
  • 1.24e4
  • 1.75e4
72.19
  • 72.19
  • 61.22
  • 58.74
  • 58.33
  • 41.42
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
8.60e3
  • 8.60e3
71.22
  • 71.22
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
8.82e3
  • 8.82e3
70.48
  • 70.48
AEIR
  • AEIR
UBERON:0004117pharyngeal pouch
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
8.96e3
  • 8.96e3
  • 9.96e3
  • 1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
70.00
  • 70.00
  • 66.67
  • 50.00
  • 50.00
  • 50.00
  • 50.00
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
8.97e3
  • 8.97e3
69.95
  • 69.95
AEIR
  • AEIR
ZFA:0000003adaxial cell (Danio)
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
9.67e3
  • 9.67e3
  • 1.08e4
  • 1.12e4
  • 1.16e4
67.63
  • 67.63
  • 63.87
  • 62.48
  • 61.09
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2000033intermediate cell mass of mesoderm
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000026Segmentation:14-19 somites
9.96e3
  • 9.96e3
  • 1.02e4
  • 1.07e4
  • 1.49e4
66.65
  • 66.65
  • 65.77
  • 64.27
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
  • UBERON:0000066fully formed stage
  • ZFS:0000049segmentation
1.02e4
  • 1.02e4
  • 1.13e4
  • 1.14e4
  • 1.19e4
  • 1.22e4
  • 1.24e4
  • 1.29e4
  • 1.33e4
  • 1.34e4
  • 1.35e4
  • 1.37e4
  • 1.37e4
  • 1.42e4
  • 1.47e4
  • 1.49e4
65.92
  • 65.92
  • 62.04
  • 61.75
  • 60.04
  • 59.19
  • 58.31
  • 56.73
  • 55.51
  • 55.26
  • 54.94
  • 54.05
  • 54.02
  • 52.51
  • 50.68
  • 49.95
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003051ear vesicle
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000033Hatching:Long-pec
1.02e4
  • 1.02e4
  • 1.12e4
  • 1.15e4
  • 1.17e4
  • 1.28e4
  • 1.34e4
65.89
  • 65.89
  • 62.48
  • 61.63
  • 60.84
  • 57.12
  • 54.97
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001017central nervous system
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
1.03e4
  • 1.03e4
  • 1.07e4
65.37
  • 65.37
  • 64.27
AEIR
  • AEIR
  • AEIR
UBERON:0005068neural rod
  • ZFS:0000026Segmentation:14-19 somites
1.03e4
  • 1.03e4
65.37
  • 65.37
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.04e4
  • 1.04e4
65.05
  • 65.05
AEIR
  • AEIR
UBERON:2000083ventral mesoderm
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
1.10e4
  • 1.10e4
  • 1.10e4
  • 1.17e4
  • 1.23e4
63.32
  • 63.32
  • 63.32
  • 60.70
  • 58.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
1.13e4
  • 1.13e4
  • 1.33e4
  • 1.34e4
62.28
  • 62.28
  • 55.40
  • 55.08
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.17e4
  • 1.17e4
  • 1.22e4
60.84
  • 60.84
  • 59.06
AEIR
  • AEIR
  • AEIR
UBERON:0001943midbrain tegmentum
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.21e4
  • 1.21e4
  • 1.23e4
59.36
  • 59.36
  • 58.80
AEIR
  • AEIR
  • AEIR
UBERON:0001893telencephalon
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
1.26e4
  • 1.26e4
  • 1.26e4
  • 1.28e4
  • 1.33e4
  • 1.49e4
57.87
  • 57.87
  • 57.87
  • 57.14
  • 55.53
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005886post-hyoid pharyngeal arch skeleton
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
1.26e4
  • 1.26e4
  • 1.26e4
  • 1.41e4
57.87
  • 57.87
  • 57.87
  • 52.92
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.29e4
  • 1.29e4
56.83
  • 56.83
AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
1.30e4
  • 1.30e4
  • 1.34e4
  • 1.49e4
56.49
  • 56.49
  • 54.97
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000004nose
  • ZFS:0000031Pharyngula:Prim-25
1.32e4
  • 1.32e4
55.86
  • 55.86
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.32e4
  • 1.32e4
  • 1.90e4
55.72
  • 55.72
  • 36.29
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.33e4
  • 1.33e4
55.53
  • 55.53
AEIR
  • AEIR
UBERON:0001637artery
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.36e4
  • 1.36e4
  • 1.36e4
54.53
  • 54.53
  • 54.53
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.38e4
  • 1.38e4
53.67
  • 53.67
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • ZFS:0000033Hatching:Long-pec
1.39e4
  • 1.39e4
53.55
  • 53.55
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
1.43e4
  • 1.43e4
  • 1.54e4
52.11
  • 52.11
  • 48.59
AEIR
  • AEIR
  • AEIR
UBERON:0007122pharyngeal pouch 1
  • ZFS:0000031Pharyngula:Prim-25
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2001096immature anterior macula
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0001008renal system
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0003064intermediate mesoderm
  • ZFS:0000023Segmentation:1-4 somites
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.67e4
  • 1.67e4
44.10
  • 44.10
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.75e4
  • 1.75e4
41.42
  • 41.42
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.77
  • 40.77
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.88e4
  • 1.88e4
37.11
  • 37.11
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.92e4
  • 1.92e4
35.55
  • 35.55
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi13 species13 genesCompare expression
Bilateria20 species26 genesCompare expression

Orthology information comes from OMA : ENSDARG00000055229.

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Otophysi1 geneCompare expression
Opisthokonta5 genesCompare expression
Eukaryota49 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000055229.

Cross-references

EnsemblENSDARG00000055229 (ncs1a)
ZFINZDB-GENE-021220-1 (ncs1a)
EMBLAY190280
Uniprot/SPTREMBLF1R8V7, F1R8V7_DANRE, Q804C0, Q804C0_DANRE, X1WEC7, X1WEC7_DANRE

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