D. rerio Gene: nkd2a - ENSDARG00000055271 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000055271
Namenkd2a
Descriptionnaked cuticle homolog 2a [Source:ZFIN;Acc:ZDB-GENE-071130-1]
OrganismDanio rerio (zebrafish)
Synonym(s)nkd2, nkd2l

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000468multi-cellular organism
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
1.54e3
  • 1.54e3
  • 6.64e3
  • 7.47e3
  • 7.91e3
  • 1.47e4
  • 1.49e4
94.85
  • 94.85
  • 77.77
  • 74.99
  • 73.52
  • 50.90
  • 50.20
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
6.35e3
  • 6.35e3
  • 1.20e4
  • 1.30e4
  • 1.45e4
  • 1.76e4
78.74
  • 78.74
  • 59.95
  • 56.35
  • 51.56
  • 40.90
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004749blastodisc
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000015Blastula:Dome
7.47e3
  • 7.47e3
  • 1.49e4
  • 1.49e4
75.00
  • 75.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
1.08e4
  • 1.08e4
  • 1.49e4
63.91
  • 63.91
  • 50.27
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.09e4
  • 1.09e4
63.61
  • 63.61
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.09e4
  • 1.09e4
  • 1.72e4
63.49
  • 63.49
  • 42.53
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.16e4
  • 1.16e4
61.20
  • 61.20
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.24e4
  • 1.24e4
58.36
  • 58.36
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.30e4
  • 1.30e4
56.44
  • 56.44
AEIR
  • AEIR
UBERON:0002533post-anal tail bud
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
1.33e4
  • 1.33e4
  • 1.38e4
  • 1.41e4
55.53
  • 55.53
  • 53.83
  • 52.75
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000029Pharyngula:Prim-5
1.34e4
  • 1.34e4
54.99
  • 54.99
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.38e4
  • 1.38e4
  • 1.59e4
53.77
  • 53.77
  • 46.84
AEIR
  • AEIR
  • AEIR
UBERON:0004750blastoderm
  • ZFS:0000019Gastrula:Shield
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
1.58e4
  • 1.58e4
  • 1.74e4
47.03
  • 47.03
  • 41.75
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.62e4
  • 1.62e4
45.70
  • 45.70
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.84e4
  • 1.84e4
38.23
  • 38.23
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.86e4
  • 1.86e4
37.62
  • 37.62
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.90e4
  • 1.90e4
  • 2.20e4
36.49
  • 36.49
  • 26.31
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.15e4
  • 2.15e4
27.87
  • 27.87
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EMBLCU463028
EnsemblENSDARG00000055271 (nkd2a)
Uniprot/SPTREMBLF1QI44, F1QI44_DANRE
ZFINZDB-GENE-071130-1 (nkd2a), ZDB-GENE-081013-6 (nkd2b)

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