D. rerio Gene: afap1 - ENSDARG00000055284 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000055284
Nameafap1
Descriptionactin filament associated protein 1 [Source:ZFIN;Acc:ZDB-GENE-100316-6]
OrganismDanio rerio (zebrafish)
Synonym(s)im:7148276

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
3.83e3
  • 3.83e3
87.18
  • 87.18
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
5.41e3
  • 5.41e3
  • 7.59e3
  • 1.00e4
  • 1.16e4
  • 1.18e4
81.89
  • 81.89
  • 74.59
  • 66.47
  • 61.01
  • 60.47
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
7.59e3
  • 7.59e3
74.58
  • 74.58
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
7.90e3
  • 7.90e3
  • 1.30e4
73.55
  • 73.55
  • 56.42
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
8.70e3
  • 8.70e3
70.87
  • 70.87
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000022Gastrula:Bud
9.13e3
  • 9.13e3
69.43
  • 69.43
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
9.23e3
  • 9.23e3
69.11
  • 69.11
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
9.89e3
  • 9.89e3
  • 1.14e4
66.90
  • 66.90
  • 61.88
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.02e4
  • 1.02e4
65.99
  • 65.99
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.09e4
  • 1.09e4
63.64
  • 63.64
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.11e4
  • 1.11e4
  • 1.30e4
62.77
  • 62.77
  • 56.31
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.13e4
  • 1.13e4
62.19
  • 62.19
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
1.14e4
  • 1.14e4
61.70
  • 61.70
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000030Pharyngula:Prim-15
1.17e4
  • 1.17e4
  • 1.22e4
  • 1.31e4
  • 1.34e4
  • 1.34e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
60.70
  • 60.70
  • 59.08
  • 56.24
  • 54.99
  • 54.99
  • 50.00
  • 49.99
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
1.30e4
  • 1.30e4
56.31
  • 56.31
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.38e4
  • 1.38e4
53.90
  • 53.90
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.41e4
  • 1.41e4
52.80
  • 52.80
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
1.43e4
  • 1.43e4
  • 1.71e4
52.16
  • 52.16
  • 42.58
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.44e4
  • 1.44e4
51.75
  • 51.75
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.44e4
  • 1.44e4
51.64
  • 51.64
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.58e4
  • 1.58e4
47.09
  • 47.09
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.60e4
  • 1.60e4
46.53
  • 46.53
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.68e4
  • 1.68e4
43.81
  • 43.81
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EMBLBX465854
EnsemblENSDARG00000055284 (afap1)
Uniprot/SPTREMBLE7F4D2, E7F4D2_DANRE, U3JAR6, U3JAR6_DANRE
ZFINZDB-GENE-100316-6 (afap1)

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