D. rerio Gene: ret - ENSDARG00000055305 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000055305
Nameret
Descriptionret proto-oncogene receptor tyrosine kinase [Source:ZFIN;Acc:ZDB-GENE-980526-307]
OrganismDanio rerio (zebrafish)
Synonym(s)c-ret, cret, etid315074.13, ret1, wu:fd13h01
Orthologs(s)17 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0006600presumptive enteric nervous system
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
4.98e3
  • 4.98e3
  • 1.49e4
  • 1.49e4
83.34
  • 83.34
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
5.94e3
  • 5.94e3
  • 8.38e3
  • 9.52e3
  • 1.09e4
80.12
  • 80.12
  • 71.93
  • 68.13
  • 63.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
ZFA:0001624pronephric distal late tubule (Danio)
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
5.97e3
  • 5.97e3
  • 1.49e4
80.00
  • 80.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0005493hyoid muscle
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
7.47e3
  • 7.47e3
  • 1.49e4
75.00
  • 75.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0002005enteric nervous system
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000036Larval:Day 4
  • ZFS:0000035Larval:Protruding-mouth
7.47e3
  • 7.47e3
  • 1.49e4
  • 1.49e4
75.00
  • 75.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003060pronephric duct
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000028Segmentation:26+ somites
8.96e3
  • 8.96e3
  • 1.34e4
  • 1.41e4
  • 1.42e4
69.98
  • 69.98
  • 54.97
  • 52.75
  • 52.60
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000024Segmentation:5-9 somites
9.41e3
  • 9.41e3
  • 9.78e3
  • 1.05e4
  • 1.10e4
  • 1.13e4
  • 1.21e4
  • 1.31e4
  • 1.31e4
  • 1.38e4
  • 1.45e4
68.51
  • 68.51
  • 67.26
  • 64.99
  • 63.04
  • 62.25
  • 59.64
  • 56.26
  • 56.12
  • 53.68
  • 51.49
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.01e4
  • 1.01e4
66.06
  • 66.06
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.02e4
  • 1.02e4
  • 1.06e4
  • 1.11e4
65.89
  • 65.89
  • 64.43
  • 62.87
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.04e4
  • 1.04e4
65.05
  • 65.05
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.07e4
  • 1.07e4
64.01
  • 64.01
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.10e4
  • 1.10e4
63.14
  • 63.14
AEIR
  • AEIR
UBERON:0004362pharyngeal arch 1
  • ZFS:0000030Pharyngula:Prim-15
1.12e4
  • 1.12e4
62.50
  • 62.50
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.18e4
  • 1.18e4
60.51
  • 60.51
AEIR
  • AEIR
UBERON:2002225posterior pronephric duct
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
1.19e4
  • 1.19e4
  • 1.49e4
60.00
  • 60.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000106zygote stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
  • ZFS:0000042Juvenile:Days 30-44
1.20e4
  • 1.20e4
  • 1.25e4
  • 1.33e4
  • 1.34e4
  • 1.36e4
  • 1.38e4
  • 1.39e4
  • 1.40e4
  • 1.44e4
  • 1.47e4
  • 1.50e4
  • 1.50e4
59.77
  • 59.77
  • 58.22
  • 55.37
  • 55.26
  • 54.44
  • 53.94
  • 53.34
  • 53.12
  • 51.93
  • 50.90
  • 49.80
  • 49.71
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.22e4
  • 1.22e4
59.12
  • 59.12
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.23e4
  • 1.23e4
58.83
  • 58.83
AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
1.28e4
  • 1.28e4
  • 1.29e4
  • 1.34e4
57.11
  • 57.11
  • 56.79
  • 55.24
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000033Hatching:Long-pec
1.29e4
  • 1.29e4
56.65
  • 56.65
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
1.31e4
  • 1.31e4
  • 1.46e4
56.19
  • 56.19
  • 51.24
AEIR
  • AEIR
  • AEIR
UBERON:0002539pharyngeal arch
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000030Pharyngula:Prim-15
1.33e4
  • 1.33e4
  • 1.39e4
  • 1.41e4
55.53
  • 55.53
  • 53.55
  • 52.92
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001675trigeminal ganglion
  • ZFS:0000029Pharyngula:Prim-5
1.37e4
  • 1.37e4
54.15
  • 54.15
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.39e4
  • 1.39e4
53.39
  • 53.39
AEIR
  • AEIR
UBERON:0001017central nervous system
  • ZFS:0000028Segmentation:26+ somites
1.41e4
  • 1.41e4
52.92
  • 52.92
AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000033Hatching:Long-pec
1.41e4
  • 1.41e4
52.75
  • 52.75
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.47e4
  • 1.47e4
50.85
  • 50.85
AEIR
  • AEIR
UBERON:0005428vagal neural crest
  • ZFS:0000031Pharyngula:Prim-25
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0011649levator operculi
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2000465adductor operculi
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2000498dilator operculi
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0002633motor nucleus of trigeminal nerve
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2001391anterior lateral line ganglion
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000533primary motor neuron
  • ZFS:0000026Segmentation:14-19 somites
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2001314posterior lateral line ganglion
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.64e4
  • 1.64e4
45.11
  • 45.11
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.70e4
  • 1.70e4
42.94
  • 42.94
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.71e4
  • 1.71e4
42.88
  • 42.88
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.73e4
  • 1.73e4
42.02
  • 42.02
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
1.97e4
  • 1.97e4
34.18
  • 34.18
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.00e4
  • 2.00e4
32.96
  • 32.96
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Cross-references

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