D. rerio Gene: CAPN1 (1 to many) - ENSDARG00000055338 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000055338
NameCAPN1 (1 to many)
Descriptionsi:dkeyp-50d11.2 [Source:ZFIN;Acc:ZDB-GENE-091113-22]
OrganismDanio rerio (zebrafish)
Synonym(s)canp, canpl1, capn1, mucanp, mucl
Paralog(s)8 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
1.30e3
  • 1.30e3
95.64
  • 95.64
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.58e3
  • 1.58e3
94.71
  • 94.71
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
2.19e3
  • 2.19e3
92.68
  • 92.68
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
4.55e3
  • 4.55e3
84.76
  • 84.76
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
4.74e3
  • 4.74e3
84.12
  • 84.12
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
7.44e3
  • 7.44e3
  • 1.05e4
75.07
  • 75.07
  • 64.88
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
7.82e3
  • 7.82e3
  • 1.53e4
73.82
  • 73.82
  • 48.78
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
7.87e3
  • 7.87e3
  • 1.22e4
  • 1.35e4
  • 1.36e4
  • 1.63e4
73.65
  • 73.65
  • 59.27
  • 54.76
  • 54.57
  • 45.45
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
8.66e3
  • 8.66e3
70.99
  • 70.99
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
9.63e3
  • 9.63e3
67.77
  • 67.77
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.11e4
  • 1.11e4
62.85
  • 62.85
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.14e4
  • 1.14e4
61.94
  • 61.94
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.20e4
  • 1.20e4
  • 1.36e4
59.98
  • 59.98
  • 54.62
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.20e4
  • 1.20e4
59.92
  • 59.92
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.20e4
  • 1.20e4
59.67
  • 59.67
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.25e4
  • 1.25e4
58.23
  • 58.23
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.25e4
  • 1.25e4
58.10
  • 58.10
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.31e4
  • 1.31e4
56.17
  • 56.17
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
1.32e4
  • 1.32e4
  • 1.36e4
55.93
  • 55.93
  • 54.29
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.40e4
  • 1.40e4
53.00
  • 53.00
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
1.55e4
  • 1.55e4
48.26
  • 48.26
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.64e4
  • 1.64e4
45.04
  • 45.04
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.71e4
  • 1.71e4
42.80
  • 42.80
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.88
  • 40.88
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Paralogs (same species)

Paralogy information comes from OMA : ENSDARG00000055338.

Cross-references

EnsemblENSDARG00000055338 (CAPN1 (1 to many))
HGNCHGNC:1476 (CAPN1 (1 to many))
ZFINZDB-GENE-091113-22 (si:dkeyp-50d11.2)
EMBLBX530023
Uniprot/SPTREMBLE9QFN0, E9QFN0_DANRE

Do not show this banner again