Gene: zgc:163121 - ENSDARG00000055370 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000055370
Name	zgc:163121
Description	zgc:163121 [Source:ZFIN;Acc:ZDB-GENE-070424-80]
Organism	Danio rerio (zebrafish)
Orthologs(s)	20 orthologs
Paralog(s)	6 paralogs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0004734	gastrula	[+] 2 stages ZFS:0000019Gastrula:Shield ZFS:0000022Gastrula:Bud	9.40e3 9.40e3 1.24e4	68.51 68.51 58.39	AEIR AEIR AEIR
UBERON:0000922	embryo	[+] 5 stages ZFS:0000029Pharyngula:Prim-5 UBERON:0004707pharyngula stage UBERON:0000068embryo stage ZFS:0000033Hatching:Long-pec ZFS:0000037Larval:Day 5	9.50e3 9.50e3 1.07e4 1.15e4 1.30e4 1.80e4	68.18 68.18 64.24 61.34 56.50 39.80	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0002548	larva	[+] 2 stages UBERON:0000069larval stage ZFS:0000037Larval:Day 5	1.08e4 1.08e4 1.73e4	63.88 63.88 42.05	AEIR AEIR AEIR
UBERON:0000033	head	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000066fully formed stage	1.14e4 1.14e4 1.45e4	61.72 61.72 51.33	AEIR AEIR AEIR
UBERON:0000970	eye	[+] 1 stage ZFS:0000031Pharyngula:Prim-25	1.23e4 1.23e4	58.85 58.85	AEIR AEIR
UBERON:0000307	blastula	[+] 1 stage ZFS:0000015Blastula:Dome	1.32e4 1.32e4	55.69 55.69	AEIR AEIR
UBERON:0000206	pharyngeal gill	[+] 1 stage UBERON:0000066fully formed stage	1.38e4 1.38e4	53.93 53.93	AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	2.34e4 2.34e4	21.59 21.59	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

EST data: Bgee
RNA-Seq data: Bgee

Sources of raw data:

EST data: UniGene
RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Bilateria	7 species Drosophila melanogaster (fruit fly) Caenorhabditis elegans (nematode) Drosophila ananassae Drosophila mojavensis Drosophila simulans Drosophila virilis Drosophila yakuba	20 genes FBgn0000153 b FBgn0004516 Gad1 FBgn0036975 CG5618 WBGene00006762 unc-25 FBgn0087371 GF10330 FBgn0091287 GF14260 FBgn0101401 GF24407 FBgn0134178 GI11417 FBgn0134678 GI11920 FBgn0140980 GI18241 FBgn0185014 GD13295 FBgn0186549 GD14877 FBgn0195294 GD23928 FBgn0200835 GJ13613 FBgn0201014 GJ13795 FBgn0205312 GJ18147 FBgn0236086 GE18686 FBgn0237005 GE19668 FBgn0237956 GE20651 FBgn0240207 GE23006	Compare expression	[+]

Orthology information comes from OMA : ENSDARG00000055370.

Paralogs (same species)

Taxon name	Gene(s)	Expression comparison	See details
Bilateria	4 genes ENSDARG00000015537 gad2 ENSDARG00000026348 csad ENSDARG00000027419 gad1b ENSDARG00000093411 gad1a	Compare expression	[+]
Eukaryota	6 genes ENSDARG00000015537 gad2 ENSDARG00000016494 ddc ENSDARG00000026348 csad ENSDARG00000027419 gad1b ENSDARG00000075454 hdc ENSDARG00000093411 gad1a	Compare expression	[+]

Paralogy information comes from OMA : ENSDARG00000055370.

Cross-references

Ensembl	ENSDARG00000055370 (zgc:163121)
ZFIN	ZDB-GENE-070424-80 (zgc:163121)
EMBL	CR925777, CU693487
Uniprot/SPTREMBL	B0V1P2, B0V1P2_DANRE, B0V1P3, B0V1P3_DANRE